Gm15079 Pseudogene Detail

Summary

• Symbol
  Gm15079
• Name
  predicted gene 15079

• Feature Type
  pseudogene
• IDs
  MGI:3705703
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:140217969-140218184 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 62.11 cM

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705703	pseudogene	ChrX:140217969-140218184 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014870	pseudogene	ChrX:138917160-138917375 (+)
A/J	MGP_AJ_G0014863	pseudogene	ChrX:138300737-138301009 (+)
AKR/J	MGP_AKRJ_G0014805	pseudogene	ChrX:142729752-142729967 (+)
BALB/cJ	MGP_BALBcJ_G0014819	pseudogene	ChrX:136580489-136580704 (+)
C3H/HeJ	MGP_C3HHeJ_G0014655	pseudogene	ChrX:139036016-139036231 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015307	pseudogene	ChrX:142937203-142937418 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014269	pseudogene	ChrX:119748195-119748380 (+)
CBA/J	MGP_CBAJ_G0014644	pseudogene	ChrX:147355185-147355400 (+)
DBA/2J	MGP_DBA2J_G0014727	pseudogene	ChrX:137396890-137397105 (+)
FVB/NJ	MGP_FVBNJ_G0014710	pseudogene	ChrX:136621544-136621759 (+)
LP/J	MGP_LPJ_G0014826	pseudogene	ChrX:139840807-139841022 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014754	pseudogene	ChrX:154907288-154907503 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015288	pseudogene	ChrX:138215987-138216202 (+)
PWK/PhJ	MGP_PWKPhJ_G0014070	pseudogene	ChrX:116616485-116616817 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0014349	pseudogene	ChrX:136649845-136651099 (+)

Homology

• Gene Tree
  Gm15079
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000082223 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082223	Ensembl Gene Model | MGI Sequence Detail	216	C57BL/6J
transcript	ENSMUST00000121943	Ensembl | MGI Sequence Detail	216	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;