Rpl39-ps Pseudogene Detail

Summary

• Symbol
  Rpl39-ps
• Name
  ribosomal protein L39, pseudogene
• Synonyms
  ENSMUSG00000036305, Gm15430

• Feature Type
  pseudogene
• IDs
  MGI:3705781
  NCBI Gene: 100503815
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:102543473-102543623 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 57.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705781	pseudogene	Chr15:102543417-102543775 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039691	pseudogene	Chr2:50701947-50702301 (-)
A/J	MGP_AJ_G0039670	pseudogene	Chr15:100699307-100699661 (+)
AKR/J	MGP_AKRJ_G0039615	pseudogene	Chr2:50155045-50155399 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0039321	pseudogene	Chr2:50140461-50140815 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040198	pseudogene	Chr15:108731267-108731621 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036922	pseudogene	ChrX:30057046-30057401 (-)
CAST/EiJ	MGP_CASTEiJ_G0038513	pseudogene	ChrX:20239345-20239700 (-)
CBA/J	MGP_CBAJ_G0039292	pseudogene	Chr2:54149779-54150133 (-)
DBA/2J	MGP_DBA2J_G0039467	pseudogene	Chr15:99981674-99982028 (+)
FVB/NJ	MGP_FVBNJ_G0039444	pseudogene	Chr2:48100160-48100514 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039428	pseudogene	Chr15:116091845-116092199 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040303	pseudogene	Chr15:103797969-103798323 (+)
PWK/PhJ	MGP_PWKPhJ_G0038190	pseudogene	ChrX:19703745-19704439 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037936	pseudogene	ChrX:20723637-20723989 (-)
WSB/EiJ	MGP_WSBEiJ_G0038659	pseudogene	Chr15:104417357-104417711 (+)

Homology

• Gene Tree
  Rpl39-ps
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  20 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Rpl39-ps
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000036305 (Evidence)
• NCBI Gene
  100503815

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000036305	Ensembl Gene Model | MGI Sequence Detail	151	C57BL/6J
transcript	ENSMUST00000146505	Ensembl | MGI Sequence Detail	151	Not Applicable

Other
Accession IDs

MGI:3704460

References

• Summaries
  All 26

  Diseases 1

  Phenotypes 20
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Rpl39-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133461	Chr15:102543413-102543422 (+)	-55 bp