Gm15444 Gene Detail

Summary

• Symbol
  Gm15444
• Name
  predicted gene 15444

• Feature Type
  lncRNA gene
• IDs
  MGI:3705796
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:96116943-96127484 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.67 cM

Strain
Comparison

• SNPs within 2kb
  309 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705796	lncRNA gene	Chr3:96116943-96127484 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003792	antisense lncRNA gene	Chr3:97015060-97026967 (-)
A/J	MGP_AJ_G0003772	antisense lncRNA gene	Chr3:93970728-93981080 (-)
AKR/J	MGP_AKRJ_G0003749	antisense lncRNA gene	Chr3:96171437-96186776 (-)
BALB/cJ	MGP_BALBcJ_G0003761	antisense lncRNA gene	Chr3:93750245-93761558 (-)
C3H/HeJ	MGP_C3HHeJ_G0003707	antisense lncRNA gene	Chr3:96458994-96470395 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003902	antisense lncRNA gene	Chr3:100573762-100587127 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003406	antisense lncRNA gene	Chr3:90294086-90306566 (-)
CAST/EiJ	MGP_CASTEiJ_G0003671	antisense lncRNA gene	Chr3:95749044-95759409 (-)
CBA/J	MGP_CBAJ_G0003703	antisense lncRNA gene	Chr3:104254051-104265970 (-)
DBA/2J	MGP_DBA2J_G0003713	antisense lncRNA gene	Chr3:93274873-93285791 (-)
FVB/NJ	MGP_FVBNJ_G0003734	antisense lncRNA gene	Chr3:91337928-91348278 (-)
LP/J	MGP_LPJ_G0003793	antisense lncRNA gene	Chr3:98325904-98336573 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003721	antisense lncRNA gene	Chr3:110357274-110368908 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003902	antisense lncRNA gene	Chr3:95804622-95817245 (-)
PWK/PhJ	MGP_PWKPhJ_G0003627	antisense lncRNA gene	Chr3:93161261-93171928 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003570	antisense lncRNA gene	Chr3:94109559-94121074 (-)
WSB/EiJ	MGP_WSBEiJ_G0003707	antisense lncRNA gene	Chr3:96202750-96215354 (-)

Homology

• Gene Tree
  Gm15444
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm15444
• Find Mice (IMSR)
  8 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000086556 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086556	Ensembl Gene Model | MGI Sequence Detail	10542	C57BL/6J
transcript	ENSMUST00000148335	Ensembl | MGI Sequence Detail	388	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm15444:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34596	Chr3:96127253-96127262 (-)	226 bp
Tssr34595	Chr3:96116971-96116974 (-)	10,511 bp