Gm11546 Pseudogene Detail

Summary

• Symbol
  Gm11546
• Name
  predicted gene 11546

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3705839
  NCBI Gene: 544807
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:94687875-94688603 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 58.95 cM

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705839	pseudogene	Chr11:94687875-94692877 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040554	pseudogene	Chr11:99973958-99974687 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038727	pseudogene	Chr11:96722320-96905392 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0040650	pseudogene	Chr11:96187789-96188518 (-)
PWK/PhJ	MGP_PWKPhJ_G0038408	pseudogene	Chr11:93549487-93550195 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm11546
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm11546
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  3

• Ensembl
  ENSMUSG00000083227 (Evidence)
• NCBI Gene
  544807

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083227	Ensembl Gene Model | MGI Sequence Detail	729	C57BL/6J
transcript	ENSMUST00000120297	Ensembl | MGI Sequence Detail	354	Not Applicable
polypeptide	XP_006534667	RefSeq | MGI Sequence Detail	149	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:109163 Yu YE, et al., A deficiency in the region homologous to human 17q21.33-q23.2 causes heart defects in mice. Genetics. 2006 May;173(1):297-307