Mup-ps17 Pseudogene Detail

Summary

• Symbol
  Mup-ps17
• Name
  major urinary protein, pseudogene 17
• Synonyms
  Gm12554

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3705843
  NCBI Gene: 118567368
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:61775651-61776117 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 32.90 cM

Strain
Comparison

• SNPs within 2kb
  39 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705843	pseudogene	Chr4:61775558-61776117 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0040256	pseudogene	Chr2:128242860-128243627 (-)
C3H/HeJ	MGP_C3HHeJ_G0039952	pseudogene	Chr4:58743931-60690084 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040930	pseudogene	Chr4:62870234-62871683 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039918	pseudogene	Chr4:63008767-64956837 (-)
DBA/2J	MGP_DBA2J_G0040123	pseudogene	Chr4:56522759-58460344 (-)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0040075	pseudogene	Chr4:66133729-68067019 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041021	pseudogene	Chr4:58400233-60318966 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Mup-ps17
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Mup-ps17
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000081053 (Evidence)
• NCBI Gene
  118567368

Representative Sequences			Length	Strain/Species
genomic	118567368	NCBI Gene Model | MGI Sequence Detail	467	C57BL/6J
transcript	XR_004942276	RefSeq | MGI Sequence Detail	129	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:334686 Yang H, et al., Mup-knockout mice generated through CRISPR/Cas9-mediated deletion for use in urinary protein analysis. Acta Biochim Biophys Sin (Shanghai). 2016 May;48(5):468-73
• Latest
  J:334590 Greve S, et al., The major urinary protein gene cluster knockout mouse as a novel model for translational metabolism research. Sci Rep. 2022 Aug 1;12(1):13161