Gm15142 Pseudogene Detail

Summary

• Symbol
  Gm15142
• Name
  predicted gene 15142

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3705871
  NCBI Gene: 100040899
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:153418582-153422138 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 72.38 cM

Strain
Comparison

• SNPs within 2kb
  190 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705871	pseudogene	ChrX:153418547-153422143 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040717	pseudogene	ChrX:152179392-152183024 (-)
A/J	MGP_AJ_G0040714	pseudogene	ChrX:151681538-151692224 (-)
AKR/J	MGP_AKRJ_G0040639	pseudogene	ChrX:156507233-156510829 (+)
BALB/cJ	MGP_BALBcJ_G0040706	pseudogene	ChrX:149416169-149811249 (-)
C3H/HeJ	MGP_C3HHeJ_G0040339	pseudogene	ChrX:152455994-152459626 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0041410	pseudogene	ChrX:156876242-156879821 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0039379	pseudogene	ChrX:131685984-131689616 (-)
CBA/J	MGP_CBAJ_G0040309	pseudogene	ChrX:161077617-161081249 (-)
DBA/2J	MGP_DBA2J_G0040524	pseudogene	ChrX:150728232-150731846 (+)
FVB/NJ	MGP_FVBNJ_G0040446	pseudogene	ChrX:149560879-149564511 (-)
LP/J	MGP_LPJ_G0040564	pseudogene	ChrX:153581190-153586195 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040451	pseudogene	ChrX:169674128-169674920 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041460	pseudogene	ChrX:151713661-151717292 (-)
PWK/PhJ	MGP_PWKPhJ_G0039027	pseudogene	ChrX:128716418-128720049 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0039628	pseudogene	ChrX:149738270-149741902 (-)

Homology

• Gene Tree
  Gm15142
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  2

• Ensembl
  ENSMUSG00000084367 (Evidence)
• NCBI Gene
  100040899

Representative Sequences			Length	Strain/Species
genomic	100040899	NCBI Gene Model | MGI Sequence Detail	3557	C57BL/6J
transcript	XM_001475438	RefSeq | MGI Sequence Detail	817	C57BL/6J
polypeptide	XP_001475488	RefSeq | MGI Sequence Detail	247	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;