Gm15378 Pseudogene Detail

Summary

• Symbol
  Gm15378
• Name
  predicted gene 15378

• Feature Type
  pseudogene
• IDs
  MGI:3707457
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:74187030-74187236 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 38.16 cM

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3707457	pseudogene	ChrX:74187030-74187236 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013203	pseudogene	Chr5:106266486-106266686 (-)
A/J	MGP_AJ_G0014532	pseudogene	ChrX:71186433-71186639 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0014485	pseudogene	ChrX:70206786-70206992 (+)
C3H/HeJ	MGP_C3HHeJ_G0014318	pseudogene	ChrX:71457423-71457629 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014954	pseudogene	ChrX:73268979-73269185 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012746	pseudogene	Chr5:104730895-104731082 (-)
CBA/J	MGP_CBAJ_G0014303	pseudogene	ChrX:75220585-75220791 (+)
DBA/2J	MGP_DBA2J_G0014385	pseudogene	ChrX:70662015-70662221 (+)
FVB/NJ	MGP_FVBNJ_G0014663	pseudogene	ChrX:129725180-129725378 (+)
LP/J	MGP_LPJ_G0013137	pseudogene	Chr5:106870614-106870814 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014415	pseudogene	ChrX:77827848-77828054 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014925	pseudogene	ChrX:70841270-70841476 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012780	pseudogene	Chr5:105639871-105640071 (-)

Homology

• Gene Tree
  Gm15378
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000083416 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083416	Ensembl Gene Model | MGI Sequence Detail	207	C57BL/6J
transcript	ENSMUST00000121894	Ensembl | MGI Sequence Detail	207	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;