Gm15246 Gene Detail

Summary

• Symbol
  Gm15246
• Name
  predicted gene 15246

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3708120
  NCBI Gene: 101055907
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:168103391-168153137 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 79.04 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  954 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708120	protein coding gene	ChrX:168103391-168153137 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015799	unclassified non-coding RNA gene	ChrX:167537790-167583987 (+)
A/J	MGP_AJ_G0015774	unclassified non-coding RNA gene	ChrX:166651262-166698232 (+)
AKR/J	MGP_AKRJ_G0015739	unclassified non-coding RNA gene	ChrX:171988109-172036311 (+)
BALB/cJ	MGP_BALBcJ_G0015737	unclassified non-coding RNA gene	ChrX:164618042-164664303 (+)
C3H/HeJ	MGP_C3HHeJ_G0015556	unclassified non-coding RNA gene	ChrX:167849300-167897376 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016192	unclassified non-coding RNA gene	ChrX:172381440-172439044 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013912	unclassified non-coding RNA gene	ChrX:157367802-157414949 (+)
CAST/EiJ	MGP_CASTEiJ_G0015115	unclassified non-coding RNA gene	ChrX:146709838-146754950 (+)
CBA/J	MGP_CBAJ_G0015536	unclassified non-coding RNA gene	ChrX:177390328-177445440 (+)
DBA/2J	MGP_DBA2J_G0015634	unclassified non-coding RNA gene	ChrX:165426508-165478651 (+)
FVB/NJ	MGP_FVBNJ_G0015639	unclassified non-coding RNA gene	ChrX:164554863-164600752 (+)
LP/J	MGP_LPJ_G0015717	unclassified non-coding RNA gene	ChrX:168609402-168661803 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015664	unclassified non-coding RNA gene	ChrX:186162505-186216584 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016237	unclassified non-coding RNA gene	ChrX:167037746-167084869 (+)
PWK/PhJ	MGP_PWKPhJ_G0014894	unclassified non-coding RNA gene	ChrX:143408344-143455968 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014680	unclassified non-coding RNA gene	ChrX:147306065-147350373 (+)
WSB/EiJ	MGP_WSBEiJ_G0015215	unclassified non-coding RNA gene	ChrX:164804582-164854575 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  51
• RefSeq
  21
• UniProt
  1

• Ensembl
  ENSMUSG00000081137 (Evidence), ENSMUSG00000087159 (Evidence)
• NCBI Gene
  101055907

Representative Sequences			Length	Strain/Species
genomic	101055907	NCBI Gene Model | MGI Sequence Detail	49747	C57BL/6J
transcript	NM_001361166	RefSeq | MGI Sequence Detail	2717	C57BL/6
polypeptide	NP_001348095	RefSeq | MGI Sequence Detail	643	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR028851 Periphilin-1

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:2670977, MGI:3708119, MGI:4439351

References

• Summaries
  All 18

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:206774 Wolstenholme JT, et al., Sexual differentiation in the developing mouse brain: contributions of sex chromosome genes. Genes Brain Behav. 2013 Mar;12(2):166-80

TSS for Gm15246:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162722	ChrX:168103378-168103416 (+)	6 bp
Tssr162723	ChrX:168103605-168103630 (+)	227 bp
Tssr162724	ChrX:168103642-168103653 (+)	257 bp