Gm10390 Gene Detail

Summary

• Symbol
  Gm10390
• Name
  predicted gene 10390

• Feature Type
  lncRNA gene
• IDs
  MGI:3708725
  NCBI Gene: 100503427
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:120259161-120277328 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 60.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  575 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708725	lncRNA gene	Chr5:120259161-120277328 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004162	antisense lncRNA gene	Chr5:123434318-123452491 (-)
A/J	MGP_AJ_G0004141	antisense lncRNA gene	Chr5:118343136-118361309 (-)
AKR/J	MGP_AKRJ_G0004122	antisense lncRNA gene	Chr5:122175346-122193512 (-)
BALB/cJ	MGP_BALBcJ_G0004127	antisense lncRNA gene	Chr5:119768958-119787131 (-)
C3H/HeJ	MGP_C3HHeJ_G0004076	antisense lncRNA gene	Chr5:122708205-122726378 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004276	antisense lncRNA gene	Chr5:128080767-128098934 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003752	antisense lncRNA gene	Chr5:113073749-113091669 (-)
CAST/EiJ	MGP_CASTEiJ_G0004037	antisense lncRNA gene	Chr5:121799211-121817219 (-)
CBA/J	MGP_CBAJ_G0004070	antisense lncRNA gene	Chr5:133067319-133085492 (-)
DBA/2J	MGP_DBA2J_G0004085	antisense lncRNA gene	Chr5:118445306-118463479 (-)
FVB/NJ	MGP_FVBNJ_G0004101	antisense lncRNA gene	Chr5:117354062-117372235 (-)
LP/J	MGP_LPJ_G0004163	antisense lncRNA gene	Chr5:123909921-123928082 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004091	antisense lncRNA gene	Chr5:137071323-137089496 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004273	antisense lncRNA gene	Chr5:121740068-121758241 (-)
PWK/PhJ	MGP_PWKPhJ_G0003991	antisense lncRNA gene	Chr5:117191570-117209559 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003934	antisense lncRNA gene	Chr5:119388095-119406353 (-)
WSB/EiJ	MGP_WSBEiJ_G0004074	antisense lncRNA gene	Chr5:122327906-122346079 (-)

Homology

• Gene Tree
  Gm10390
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm10390
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000097368 (Evidence)
• NCBI Gene
  100503427

Representative Sequences			Length	Strain/Species
genomic	100503427	NCBI Gene Model | MGI Sequence Detail	18168	C57BL/6J
transcript	NR_045793	RefSeq | MGI Sequence Detail	3977	ZRU/MplStud
polypeptide	Q3TEP5	UniProt | EBI | MGI Sequence Detail	98	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm10390:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52922	Chr5:120277346-120277360 (-)	-25 bp
Tssr52921	Chr5:120277312-120277341 (-)	1 bp