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H2al1k Gene Detail
Summary
  • Symbol
    H2al1k
  • Name
    H2A histone family member L1K
  • Synonyms
    Gm14501
  • Feature Type
    protein coding gene
  • IDs
    MGI:3710586
    NCBI Gene: 547154
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    ChrX:9216866-9217375 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 4.26 cM
Strain
Comparison
more
  • SNPs within 2kb
    48 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3710586
 protein coding gene ChrX:9216838-9217376 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035576
 protein coding gene ChrX:9122350-9122795 (+)
A/J MGP_AJ_G0035543
 protein coding gene ChrX:6175289-6175798 (+)
AKR/J MGP_AKRJ_G0035475
 protein coding gene ChrX:6291782-6295631 (+)
BALB/cJ MGP_BALBcJ_G0035536
 protein coding gene ChrX:6081252-6081773 (+)
C3H/HeJ MGP_C3HHeJ_G0035263
 protein coding gene ChrX:9189045-9189565 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025786
 protein coding gene Chr2:16037936-16038461 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032935
 protein coding gene ChrX:5177406-5177864 (+)
CAST/EiJ MGP_CASTEiJ_G0024567
 protein coding gene Chr2:15403796-15404257 (-)
CBA/J MGP_CBAJ_G0035232
 protein coding gene ChrX:9740953-9748296 (+)
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0025176
 protein coding gene Chr2:14765484-14765992 (-)
LP/J MGP_LPJ_G0025301
 protein coding gene Chr2:15536891-15537416 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035375
 protein coding gene ChrX:9681380-9681900 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036088
 protein coding gene ChrX:8998878-8999398 (+)
PWK/PhJ MGP_PWKPhJ_G0034428
 protein coding gene ChrX:45928394-45928867 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0024637
 protein coding gene Chr2:15567997-15568458 (-)



Homology
more
  • Human Ortholog
    H2AL3, H2A.L variant histone 3
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    H2AL3, H2A.L variant histone 3
  • Synonyms
    H2AL1RP, H2A.L.3
  • Links
    NCBI Gene ID: 115482686
    UniProt: A0A3B3IU63

  • Chr Location
    chrX:37994272-37994904 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000100448 Ensembl Gene Model | MGI Sequence Detail 510 C57BL/6J ±  kb
transcript ENSMUST00000178196 Ensembl | MGI Sequence Detail 510 Not Applicable  
polypeptide ENSMUSP00000137043 Ensembl | MGI Sequence Detail 105 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 9
    Gene Ontology 1
  • Earliest
    J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
  • Latest
    J:161428 Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas, Annotation inferences using phylogenetic trees. 2010;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory