About   Help   FAQ
Cphx1 Gene Detail
Summary
  • Symbol
    Cphx1
  • Name
    cytoplasmic polyadenylated homeobox 1
  • Synonyms
    C330003B14Rik, Cphx, Cphx2, Cphx3, Eso-1, Gm2104, Gm2135
  • Feature Type
    protein coding gene
  • IDs
    MGI:2145733
    NCBI Gene: 105594
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr14:25941983-25956798 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 15.53 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2145733
 protein coding gene Chr14:25938728-25956798 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021074
 protein coding gene Chr14:18886654-18904612 (+)
A/J MGP_AJ_G0021023
 protein coding gene Chr14:18414109-18432085 (+)
AKR/J MGP_AKRJ_G0021000
 protein coding gene Chr14:19061437-19079635 (+)
BALB/cJ MGP_BALBcJ_G0021026
 protein coding gene Chr14:18511773-18530282 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0021459
 protein coding gene Chr14:19910607-19939890 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0020334
 protein coding gene Chr14:18884574-18904486 (+)
CBA/J MGP_CBAJ_G0020776
 protein coding gene Chr14:20408340-20426320 (+)
DBA/2J MGP_DBA2J_G0020899
 protein coding gene Chr14:18480563-18501778 (+)
FVB/NJ MGP_FVBNJ_G0020882
 protein coding gene Chr14:18097144-18115093 (+)
LP/J MGP_LPJ_G0026980
 protein coding gene Chr3:1932506-1950513 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020908
 protein coding gene Chr14:20095995-20113974 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021492
 protein coding gene Chr14:18893154-18917124 (+)
PWK/PhJ MGP_PWKPhJ_G0020083
 protein coding gene Chr14:17841260-17861160 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019906
 protein coding gene Chr14:18692311-18715161 (+)
WSB/EiJ MGP_WSBEiJ_G0020390
 protein coding gene Chr14:18850792-18869991 (+)



Homology
more
  • Human Ortholog
    CPHXL, cytoplasmic polyadenylated homeobox like
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CPHXL, cytoplasmic polyadenylated homeobox like
  • Synonyms
    CPHXL1
  • Links
    NCBI Gene ID: 105371346
    UniProt: A0A1W2PPM1

  • Chr Location
    chr16:75714131-75726490 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    795
  • Tissues
    58
  • cDNA Data
    17
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 105594 NCBI Gene Model | MGI Sequence Detail 14816 C57BL/6J ±  kb
transcript NM_175342 RefSeq | MGI Sequence Detail 1653 C57BL/6  
polypeptide NP_780551 RefSeq | MGI Sequence Detail 182 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR050720 Engrailed Homeobox Transcription Factors
    IPR001356 Homeobox domain
    IPR009057 Homeobox-like domain superfamily
Molecular
Reagents
less
  • All nucleic 28
    cDNA 22
    Primer pair 4
    Other 2

    Microarray probesets 9
Other
Accession IDs
less
MGI:2145746, MGI:2145864, MGI:3711264, MGI:3780272
References
more
  • Summaries
    All 31
    Developmental Gene Expression 5
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:215487 Thompson CL, et al., A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Neuron. 2014 Jul 16;83(2):309-23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory