Gm11532 Gene Detail

Summary

• Symbol
  Gm11532
• Name
  predicted gene 11532

• Feature Type
  lncRNA gene
• IDs
  MGI:3713523
  NCBI Gene: 100127433
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:96911334-96917164 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 60.56 cM

Strain
Comparison

• SNPs within 2kb
  188 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3713523	lncRNA gene	Chr11:96911334-96917244 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015200	unclassified non-coding RNA gene	Chr11:99398300-99404030 (-)
A/J	MGP_AJ_G0015174	unclassified non-coding RNA gene	Chr11:95329415-95335077 (-)
AKR/J	MGP_AKRJ_G0015137	unclassified non-coding RNA gene	Chr11:98285244-98291155 (-)
BALB/cJ	MGP_BALBcJ_G0015136	unclassified non-coding RNA gene	Chr11:95816514-95823169 (-)
C3H/HeJ	MGP_C3HHeJ_G0014960	unclassified non-coding RNA gene	Chr11:98396030-98401747 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015593	unclassified non-coding RNA gene	Chr11:102482404-102488150 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013336	unclassified non-coding RNA gene	Chr11:92791619-92797391 (-)
CAST/EiJ	MGP_CASTEiJ_G0014513	unclassified non-coding RNA gene	Chr11:99251155-99256892 (-)
CBA/J	MGP_CBAJ_G0014939	unclassified non-coding RNA gene	Chr11:106690922-106696587 (-)
DBA/2J	MGP_DBA2J_G0015032	unclassified non-coding RNA gene	Chr11:94879909-94886222 (-)
FVB/NJ	MGP_FVBNJ_G0015044	unclassified non-coding RNA gene	Chr11:94357488-94363208 (-)
LP/J	MGP_LPJ_G0015113	unclassified non-coding RNA gene	Chr11:99924297-99932347 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015070	unclassified non-coding RNA gene	Chr11:106612988-106618720 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015632	unclassified non-coding RNA gene	Chr11:98579069-98585900 (-)
PWK/PhJ	MGP_PWKPhJ_G0014305	unclassified non-coding RNA gene	Chr11:95851583-95857341 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014092	unclassified non-coding RNA gene	Chr11:98302855-98308618 (-)
WSB/EiJ	MGP_WSBEiJ_G0014616	unclassified non-coding RNA gene	Chr11:98485923-98491666 (-)

Homology

• Gene Tree
  Gm11532
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  8
• Gene trapped
  7
• Targeted
  1
• Genomic Mutations
  1 involving Gm11532
• Find Mice (IMSR)
  10 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000087067 (Evidence)
• NCBI Gene
  100127433

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087067	Ensembl Gene Model | MGI Sequence Detail	5831	C57BL/6J
transcript	ENSMUST00000128111	Ensembl | MGI Sequence Detail	5272	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 19

  Phenotypes 9
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm11532:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr110382	Chr11:96916981-96917005 (-)	171 bp
Tssr110381	Chr11:96916962-96916973 (-)	196 bp