Apol7d Gene Detail

Summary

• Symbol
  Apol7d
• Name
  apolipoprotein L 7d
• Synonyms
  ENSMUSG00000073652, Gm15456

• Feature Type
  lncRNA gene
• IDs
  MGI:3723449
  NCBI Gene: 100042814
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:71692494-71702002 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 36.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  349 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3723449	lncRNA gene	Chr1:71691996-71702002 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002698	antisense lncRNA gene	Chr1:72090344-72100406 (+)
A/J	MGP_AJ_G0002674	antisense lncRNA gene	Chr1:69542736-69552736 (+)
AKR/J	MGP_AKRJ_G0002654	antisense lncRNA gene	Chr1:71537771-71547793 (+)
BALB/cJ	MGP_BALBcJ_G0002660	antisense lncRNA gene	Chr1:69666482-69676337 (+)
C3H/HeJ	MGP_C3HHeJ_G0002620	antisense lncRNA gene	Chr1:71864324-71874313 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002804	antisense lncRNA gene	Chr1:74846303-74856577 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002351	antisense lncRNA gene	Chr1:65256542-65266106 (+)
CAST/EiJ	MGP_CASTEiJ_G0002592	antisense lncRNA gene	Chr1:71113878-71123935 (+)
CBA/J	MGP_CBAJ_G0002615	antisense lncRNA gene	Chr1:77346746-77356797 (+)
DBA/2J	MGP_DBA2J_G0002620	antisense lncRNA gene	Chr1:68936589-68946775 (+)
FVB/NJ	MGP_FVBNJ_G0002640	antisense lncRNA gene	Chr1:68117664-68127738 (+)
LP/J	MGP_LPJ_G0002700	antisense lncRNA gene	Chr1:73156382-73166377 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002630	antisense lncRNA gene	Chr1:80857050-80868542 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002809	antisense lncRNA gene	Chr1:71528332-71539282 (+)
PWK/PhJ	MGP_PWKPhJ_G0002550	antisense lncRNA gene	Chr1:68366121-68376618 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002504	antisense lncRNA gene	Chr1:70938326-70948414 (+)
WSB/EiJ	MGP_WSBEiJ_G0002622	antisense lncRNA gene	Chr1:71353113-71365814 (+)

Homology

• Gene Tree
  Apol7d
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  15
• Chemically induced (other)
  1
• Gene trapped
  11
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  2 involving Apol7d
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000073652 (Evidence)
• NCBI Gene
  100042814

Representative Sequences			Length	Strain/Species
genomic	100042814	NCBI Gene Model | MGI Sequence Detail	9509	C57BL/6J
transcript	NR_040308	RefSeq | MGI Sequence Detail	1193	C57BL/6
polypeptide	Q3UXQ5	UniProt | EBI | MGI Sequence Detail	135	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3642904

References

• Summaries
  All 17

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Apol7d:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7280	Chr1:71690734-71690763 (+)	-1,745 bp