Gm11649 Pseudogene Detail

Summary

• Symbol
  Gm11649
• Name
  predicted gene 11649

• Feature Type
  pseudogene
• IDs
  MGI:3757863
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:107422757-107423131 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 70.29 cM

Strain
Comparison

• SNPs within 2kb
  187 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3757863	pseudogene	Chr11:107422757-107423131 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039660	pseudogene	Chr11:110945318-110945692 (-)
A/J	MGP_AJ_G0039658	pseudogene	Chr11:106181198-106181572 (-)
AKR/J	MGP_AKRJ_G0039584	pseudogene	Chr11:109352669-109353043 (-)
BALB/cJ	MGP_BALBcJ_G0039632	pseudogene	Chr11:106599965-106600339 (-)
C3H/HeJ	MGP_C3HHeJ_G0039294	pseudogene	Chr11:109662993-109663367 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040184	pseudogene	Chr11:114363015-114363389 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036830	pseudogene	Chr11:103444703-103445068 (-)
CAST/EiJ	MGP_CASTEiJ_G0038413	pseudogene	Chr11:110762398-110762755 (-)
CBA/J	MGP_CBAJ_G0039262	pseudogene	Chr11:119084602-119084976 (-)
DBA/2J	MGP_DBA2J_G0039455	pseudogene	Chr11:105658905-105659279 (-)
FVB/NJ	MGP_FVBNJ_G0039411	pseudogene	Chr11:105154236-105154610 (-)
LP/J	MGP_LPJ_G0039497	pseudogene	Chr11:111382785-111383159 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039415	pseudogene	Chr11:118297223-118297597 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040290	pseudogene	Chr11:109894973-109895347 (-)
PWK/PhJ	MGP_PWKPhJ_G0038087	pseudogene	Chr11:106788287-106788660 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037838	pseudogene	Chr11:109659881-109660275 (-)
WSB/EiJ	MGP_WSBEiJ_G0038645	pseudogene	Chr11:109851972-109852346 (-)

Homology

• Gene Tree
  Gm11649
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083996 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083996	Ensembl Gene Model | MGI Sequence Detail	375	C57BL/6J
transcript	ENSMUST00000118214	Ensembl | MGI Sequence Detail	375	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;