Gm5225 Pseudogene Detail

Summary

• Symbol
  Gm5225
• Name
  predicted gene 5225

• Feature Type
  pseudogene
• IDs
  MGI:3779476
  NCBI Gene: 383225
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:24242748-24243255 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 12.20 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779476	pseudogene	Chr17:24242748-24243474 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0023285	protein coding gene	Chr17:22972612-22975984 (+)
A/J	MGP_AJ_G0023245	protein coding gene	Chr17:22362654-22370536 (+)
AKR/J	MGP_AKRJ_G0023212	protein coding gene	Chr17:22437516-22437939 (+)
BALB/cJ	MGP_BALBcJ_G0023250	protein coding gene	Chr17:22545333-22552855 (+)
C3H/HeJ	MGP_C3HHeJ_G0023010	protein coding gene	Chr17:22768938-22769361 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0023693	protein coding gene	Chr17:23991680-23992003 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0022512	protein coding gene	Chr17:22604995-22605353 (+)
CBA/J	MGP_CBAJ_G0022986	protein coding gene	Chr17:24827322-24830354 (+)
DBA/2J	MGP_DBA2J_G0023115	protein coding gene	Chr17:21949716-21950139 (+)
FVB/NJ	MGP_FVBNJ_G0023085	protein coding gene	Chr17:21664854-21665277 (+)
LP/J	MGP_LPJ_G0023192	protein coding gene	Chr17:23281002-23288414 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023104	protein coding gene	Chr17:24556438-24559810 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023731	protein coding gene	Chr17:22697511-22697834 (+)
PWK/PhJ	MGP_PWKPhJ_G0022261	protein coding gene	Chr17:20695016-20698398 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0022575	protein coding gene	Chr17:22757426-22757749 (+)

Homology

• Gene Tree
  Gm5225
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000095266 (Evidence)
• NCBI Gene
  383225

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095266	Ensembl Gene Model | MGI Sequence Detail	508	C57BL/6J
transcript	ENSMUST00000178572	Ensembl | MGI Sequence Detail	508	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;