Gm5817 Gene Detail

Summary

• Symbol
  Gm5817
• Name
  predicted gene 5817

• Feature Type
  lncRNA gene
• IDs
  MGI:3779527
  NCBI Gene: 115488784
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:86472895-86474913 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779527	lncRNA gene	Chr17:86463116-86474942 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5817
  

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  14

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000120162 (Evidence)
• NCBI Gene
  115488784

Representative Sequences			Length	Strain/Species
genomic	115488784	NCBI Gene Model | MGI Sequence Detail	2019	C57BL/6J
transcript	NR_165800	RefSeq | MGI Sequence Detail	1286	ZRU/MplStud

Molecular
Reagents

• All nucleic 15

  Genomic 1

  cDNA 14

References

• Summaries
  All 8
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm5817:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149729	Chr17:86474877-86474921 (-)	14 bp