Gm6236 Pseudogene Detail

Summary

• Symbol
  Gm6236
• Name
  predicted gene 6236

• Feature Type
  pseudogene
• IDs
  MGI:3779577
  NCBI Gene: 100534370
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:9964490-9967437 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 2.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  302 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779577	pseudogene	Chr3:9964460-9967608 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012019	pseudogene	Chr3:6839151-6842098 (+)
A/J	MGP_AJ_G0012010	pseudogene	Chr3:7012525-7015473 (+)
AKR/J	MGP_AKRJ_G0011971	pseudogene	Chr3:6914368-6917315 (+)
BALB/cJ	MGP_BALBcJ_G0011988	pseudogene	Chr3:6734372-6738209 (+)
C3H/HeJ	MGP_C3HHeJ_G0011865	pseudogene	Chr3:7219064-7222012 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012293	pseudogene	Chr3:7479056-7482003 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010734	pseudogene	Chr3:5951072-5954068 (+)
CAST/EiJ	MGP_CASTEiJ_G0011648	pseudogene	Chr3:7255604-7258611 (+)
CBA/J	MGP_CBAJ_G0011838	pseudogene	Chr3:7471177-7474125 (+)
DBA/2J	MGP_DBA2J_G0011892	pseudogene	Chr3:6585233-6588180 (+)
FVB/NJ	MGP_FVBNJ_G0011900	pseudogene	Chr3:6509343-6512290 (+)
LP/J	MGP_LPJ_G0011966	pseudogene	Chr3:7366257-7369204 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011902	pseudogene	Chr3:8515665-8518612 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012300	pseudogene	Chr3:6779389-6782337 (+)
PWK/PhJ	MGP_PWKPhJ_G0011495	pseudogene	Chr3:6824257-6827464 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011311	pseudogene	Chr3:6912905-6915849 (+)
WSB/EiJ	MGP_WSBEiJ_G0011669	pseudogene	Chr3:6758096-6761103 (+)

Homology

• Gene Tree
  Gm6236
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000102795 (Evidence)
• NCBI Gene
  100534370

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102795	Ensembl Gene Model | MGI Sequence Detail	2948	C57BL/6J
transcript	ENSMUST00000193785	Ensembl | MGI Sequence Detail	1009	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;