Gm6408 Gene Detail

Summary

• Symbol
  Gm6408
• Name
  predicted gene 6408

• Feature Type
  protein coding gene
• IDs
  MGI:3779591
  NCBI Gene: 623198
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:146418775-146421514 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 85.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779591	protein coding gene	Chr5:146418753-146421514 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0030254	protein coding gene	Chr5:138657411-138659473 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0028021	protein coding gene	Chr5:139748243-139750920 (-)
CAST/EiJ	MGP_CASTEiJ_G0029471	protein coding gene	Chr5:150207776-150209920 (-)
CBA/J	MGP_CBAJ_G0030044	protein coding gene	Chr5:163785376-163806017 (-)
DBA/2J	MGP_DBA2J_G0030191	protein coding gene	Chr5:144984289-144986493 (-)
FVB/NJ	MGP_FVBNJ_G0031899	protein coding gene	Chr7:40974424-40976718 (-)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0032600	protein coding gene	Chr7:41838658-41841296 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6408
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  12 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS85001.1

• Ensembl
  ENSMUSG00000096344 (Evidence)
• NCBI Gene
  623198

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096344	Ensembl Gene Model | MGI Sequence Detail	2740	C57BL/6J
transcript	ENSMUST00000179032	Ensembl | MGI Sequence Detail	1171	Not Applicable
polypeptide	ENSMUSP00000136735	Ensembl | MGI Sequence Detail	320	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR023578 Ras guanine nucleotide exchange factor domain superfamily
  IPR000651 Ras-like guanine nucleotide exchange factor, N-terminal

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:155721 Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI), Consensus CDS project. Database Download. 2010;