Gm6821 Pseudogene Detail

Summary

• Symbol
  Gm6821
• Name
  predicted gene 6821

• Feature Type
  pseudogene
• IDs
  MGI:3779634
  NCBI Gene: 101055651
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:88289079-88290151 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 38.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779634	pseudogene	Chr3:88289076-88290727 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040303	pseudogene	Chr3:88521948-88524320 (+)
A/J	MGP_AJ_G0040287	pseudogene	Chr3:85523674-85528085 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0039921	pseudogene	Chr3:87904350-87908418 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040876	pseudogene	Chr3:91784712-91785750 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037306	pseudogene	Chr3:81143662-81144717 (+)
CAST/EiJ	MGP_CASTEiJ_G0039007	pseudogene	Chr3:88150177-88151249 (+)
CBA/J	MGP_CBAJ_G0039887	pseudogene	Chr3:94959300-94960412 (+)
DBA/2J	MGP_DBA2J_G0040085	pseudogene	Chr3:85012982-85019812 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0040135	pseudogene	Chr3:89536449-89540317 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040036	pseudogene	Chr3:101138961-101148243 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040982	pseudogene	Chr3:87384278-87403684 (+)
PWK/PhJ	MGP_PWKPhJ_G0038696	pseudogene	Chr3:84811927-84812999 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038393	pseudogene	Chr3:86574748-86575824 (+)
WSB/EiJ	MGP_WSBEiJ_G0039232	pseudogene	Chr3:87752804-87753876 (+)

Homology

• Gene Tree
  Gm6821
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm6821
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000078691 (Evidence)
• NCBI Gene
  101055651

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078691	Ensembl Gene Model | MGI Sequence Detail	1073	C57BL/6J
transcript	ENSMUST00000107540	Ensembl | MGI Sequence Detail	542	Not Applicable

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 8
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:294371 Diegel CR, et al., Independent validation of experimental results requires timely and unrestricted access to animal models and reagents. PLoS Genet. 2020 Jun;16(6):e1008940