Gm8801 Pseudogene Detail

Summary

• Symbol
  Gm8801
• Name
  predicted gene 8801

• Feature Type
  pseudogene
• IDs
  MGI:3779813
  NCBI Gene: 667766
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:36258138-36263189 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779813	pseudogene	Chr17:36258046-36264209 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040164	pseudogene	Chr17:36158286-36163308 (+)
A/J	MGP_AJ_G0040152	pseudogene	Chr17:35033317-35039349 (+)
AKR/J	MGP_AKRJ_G0040078	pseudogene	Chr17:35471248-35476297 (+)
BALB/cJ	MGP_BALBcJ_G0040140	pseudogene	Chr17:35174121-35179170 (+)
C3H/HeJ	MGP_C3HHeJ_G0039788	pseudogene	Chr17:35926552-35931601 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040732	pseudogene	Chr17:37635346-37640397 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037197	pseudogene	Chr17:32704332-32707178 (+)
CAST/EiJ	MGP_CASTEiJ_G0038877	pseudogene	Chr17:36042290-36047339 (+)
CBA/J	MGP_CBAJ_G0039753	pseudogene	Chr17:39220213-39225262 (+)
DBA/2J	MGP_DBA2J_G0039949	pseudogene	Chr17:34333396-34338445 (+)
FVB/NJ	MGP_FVBNJ_G0039911	pseudogene	Chr17:34129085-34134589 (+)
LP/J	MGP_LPJ_G0039995	pseudogene	Chr17:36538811-36543841 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039900	pseudogene	Chr17:37980797-37987576 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040831	pseudogene	Chr17:35775420-35783540 (+)
PWK/PhJ	MGP_PWKPhJ_G0038569	pseudogene	Chr17:33195494-33203371 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038273	pseudogene	Chr17:33820346-33826396 (+)
WSB/EiJ	MGP_WSBEiJ_G0039099	pseudogene	Chr17:35930481-35935152 (+)

Homology

• Gene Tree
  Gm8801
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm8801
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000092284 (Evidence)
• NCBI Gene
  667766

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092284	Ensembl Gene Model | MGI Sequence Detail	5052	C57BL/6J
transcript	ENSMUST00000173255	Ensembl | MGI Sequence Detail	1064	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53

TSS for Gm8801:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144481	Chr17:36258053-36258062 (+)	-80 bp