Gm8893 Pseudogene Detail

Summary

• Symbol
  Gm8893
• Name
  predicted gene 8893

• Feature Type
  pseudogene
• IDs
  MGI:3779818
  NCBI Gene: 667951
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:103784115-103788502 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 52.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779818	pseudogene	Chr12:103784030-103788520 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0040015	pseudogene	Chr12:101440243-101513010 (-)
AKR/J	MGP_AKRJ_G0039934	pseudogene	Chr12:104242065-104260835 (-)
BALB/cJ	MGP_BALBcJ_G0039995	pseudogene	Chr12:101792644-101797394 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0039844	pseudogene	Chr12:105331573-105336315 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0038433	pseudogene	Chr12:95694052-95698780 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0038972	pseudogene	Chr12:104704209-104708669 (-)

Homology

• Gene Tree
  Gm8893
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm8893
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1

• Ensembl
  ENSMUSG00000090555 (Evidence)
• NCBI Gene
  667951

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090555	Ensembl Gene Model | MGI Sequence Detail	4388	C57BL/6J
transcript	ENSMUST00000172146	Ensembl | MGI Sequence Detail	1242	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;