Gm9550 Pseudogene Detail

Summary

• Symbol
  Gm9550
• Name
  predicted gene 9550

• Feature Type
  pseudogene
• IDs
  MGI:3779960
  NCBI Gene: 672161
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:44178454-44179315 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 22.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779960	pseudogene	Chr14:44178454-44179315 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014831	pseudogene	ChrX:132026495-132027356 (-)
A/J	MGP_AJ_G0014827	pseudogene	ChrX:131481126-131481987 (-)
AKR/J	MGP_AKRJ_G0014764	pseudogene	ChrX:135667550-135668411 (-)
BALB/cJ	MGP_BALBcJ_G0014780	pseudogene	ChrX:129894671-129895532 (-)
C3H/HeJ	MGP_C3HHeJ_G0014611	pseudogene	ChrX:132111619-132112480 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014231	pseudogene	ChrX:112977844-112978705 (-)
CBA/J	MGP_CBAJ_G0014604	pseudogene	ChrX:140021226-140022087 (-)
DBA/2J	MGP_DBA2J_G0014691	pseudogene	ChrX:130756703-130757564 (-)
FVB/NJ	MGP_FVBNJ_G0014670	pseudogene	ChrX:130080034-130080895 (-)
LP/J	MGP_LPJ_G0014786	pseudogene	ChrX:132922431-132923292 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014717	pseudogene	ChrX:147371892-147372753 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0014313	pseudogene	ChrX:129835741-129836602 (-)

Homology

• Gene Tree
  Gm9550
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm9550
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000090265 (Evidence)
• NCBI Gene
  672161

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090265	Ensembl Gene Model | MGI Sequence Detail	862	C57BL/6J
transcript	ENSMUST00000161130	Ensembl | MGI Sequence Detail	862	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;