Gm2011 Pseudogene Detail

Summary

• Symbol
  Gm2011
• Name
  predicted gene 2011

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3780180
  NCBI Gene: 100039027
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:40801391-40822276 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 19.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  648 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780180	pseudogene	Chr3:40801255-40829823 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0039816	pseudogene	Chr3:37924963-37955554 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0039788	pseudogene	Chr3:37663509-37664772 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040357	pseudogene	Chr3:40490647-40539315 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036964	pseudogene	Chr3:35440197-35441471 (+)
CAST/EiJ	MGP_CASTEiJ_G0038555	pseudogene	Chr3:38587576-38588838 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0039614	pseudogene	Chr3:37391039-37392301 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0039650	pseudogene	Chr3:39609131-39649499 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039573	pseudogene	Chr3:44047850-44071736 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040459	pseudogene	Chr3:38524788-38554685 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0037979	pseudogene	Chr3:37903362-37904632 (+)
WSB/EiJ	no annotation

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm2011
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000107741 (Evidence), ENSMUSG00000121347 (Evidence)
• NCBI Gene
  100039027

Representative Sequences			Length	Strain/Species
genomic	100039027	NCBI Gene Model | MGI Sequence Detail	20886	C57BL/6J
transcript	NR_160689	RefSeq | MGI Sequence Detail	588	C57BL/6
polypeptide	Q9CV37	UniProt | EBI | MGI Sequence Detail	147	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR019149 Alpha/beta hydrolase domain-containing protein 18

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 2

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426