Gm2474 Pseudogene Detail

Summary

• Symbol
  Gm2474
• Name
  predicted gene 2474

• Feature Type
  pseudogene
• IDs
  MGI:3780641
  NCBI Gene: 100039882
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:13814998-13815543 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 3.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780641	pseudogene	Chr3:13814998-13815572 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012033	pseudogene	Chr3:10826998-10827555 (+)
A/J	MGP_AJ_G0012024	pseudogene	Chr3:10876341-10876899 (+)
AKR/J	MGP_AKRJ_G0011985	pseudogene	Chr3:10825085-10825642 (+)
BALB/cJ	MGP_BALBcJ_G0012001	pseudogene	Chr3:10577533-10578091 (+)
C3H/HeJ	MGP_C3HHeJ_G0011879	pseudogene	Chr3:11136009-11136567 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012306	pseudogene	Chr3:11610719-11611277 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010746	pseudogene	Chr3:9326503-9327077 (+)
CAST/EiJ	MGP_CASTEiJ_G0011660	pseudogene	Chr3:11212724-11213282 (+)
CBA/J	MGP_CBAJ_G0011852	pseudogene	Chr3:11778887-11779445 (+)
DBA/2J	MGP_DBA2J_G0011904	pseudogene	Chr3:10445858-10446415 (+)
FVB/NJ	MGP_FVBNJ_G0011914	pseudogene	Chr3:10268619-10269177 (+)
LP/J	MGP_LPJ_G0011981	pseudogene	Chr3:11396392-11396949 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011915	pseudogene	Chr3:13414364-13414922 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012313	pseudogene	Chr3:10661919-10662477 (+)
PWK/PhJ	MGP_PWKPhJ_G0011508	pseudogene	Chr3:10565530-10566088 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011323	pseudogene	Chr3:10733414-10733953 (+)
WSB/EiJ	MGP_WSBEiJ_G0011683	pseudogene	Chr3:10707778-10708335 (+)

Homology

• Gene Tree
  Gm2474
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000103856 (Evidence)
• NCBI Gene
  100039882

Representative Sequences			Length	Strain/Species
genomic	100039882	NCBI Gene Model | MGI Sequence Detail	546	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm2474:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28387	Chr3:13813987-13813990 (+)	-1,009 bp