Gm3086 Pseudogene Detail

Summary

• Symbol
  Gm3086
• Name
  predicted gene 3086

• Feature Type
  pseudogene
• IDs
  MGI:3781262
  NCBI Gene: 100040999
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:70016068-70016377 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 28.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781262	pseudogene	Chr12:70010183-70016518 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0019804	protein coding gene	Chr12:69689171-69696487 (+)
A/J	MGP_AJ_G0019762	protein coding gene	Chr12:67089300-67095548 (+)
AKR/J	MGP_AKRJ_G0019738	protein coding gene	Chr12:69099277-69105525 (+)
BALB/cJ	MGP_BALBcJ_G0019742	protein coding gene	Chr12:67551574-67557822 (+)
C3H/HeJ	MGP_C3HHeJ_G0019548	protein coding gene	Chr12:69571839-69578846 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0020194	protein coding gene	Chr12:71916190-71922767 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017814	protein coding gene	Chr12:64626681-64633068 (+)
CAST/EiJ	MGP_CASTEiJ_G0019099	protein coding gene	Chr12:64319308-64325580 (+)
CBA/J	MGP_CBAJ_G0019517	protein coding gene	Chr12:74587538-74594494 (+)
DBA/2J	MGP_DBA2J_G0019633	protein coding gene	Chr12:67004493-67010483 (+)
FVB/NJ	MGP_FVBNJ_G0019620	protein coding gene	Chr12:65902362-65908773 (+)
LP/J	MGP_LPJ_G0019705	protein coding gene	Chr12:69651167-69657825 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0019659	protein coding gene	Chr12:77882539-77888834 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020229	protein coding gene	Chr12:68583769-68590003 (+)
PWK/PhJ	MGP_PWKPhJ_G0018864	protein coding gene	Chr12:61273960-61280971 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0018659	protein coding gene	Chr12:62954308-62960544 (+)
WSB/EiJ	MGP_WSBEiJ_G0019150	protein coding gene	Chr12:69205940-69216090 (+)

Homology

• Gene Tree
  Gm3086
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm3086
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000079076 (Evidence)
• NCBI Gene
  100040999

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079076	Ensembl Gene Model | MGI Sequence Detail	310	C57BL/6J
transcript	ENSMUST00000221248	Ensembl | MGI Sequence Detail	310	Not Applicable
polypeptide	Q05CB6	UniProt | EBI | MGI Sequence Detail	67	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• EC
  3.6.4.12
• InterPro Domains
  IPR027238 RuvB-like
  IPR041048 RuvB-like, AAA-lid domain

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;