Gm3103 Pseudogene Detail

Summary

• Symbol
  Gm3103
• Name
  predicted gene 3103

• Feature Type
  pseudogene
• IDs
  MGI:3781279
  NCBI Gene: 100041027
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:137886333-137887084 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 76.88 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781279	pseudogene	Chr5:137886207-137889265 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013285	pseudogene	Chr5:142678307-142679058 (+)
A/J	MGP_AJ_G0013265	pseudogene	Chr5:136468269-136469020 (+)
AKR/J	MGP_AKRJ_G0013231	pseudogene	Chr5:140912430-140913188 (+)
BALB/cJ	MGP_BALBcJ_G0013245	pseudogene	Chr5:137855891-137856642 (+)
C3H/HeJ	MGP_C3HHeJ_G0013094	pseudogene	Chr5:141563071-141563822 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013612	pseudogene	Chr5:147989535-147990286 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011759	pseudogene	Chr5:130671355-130672118 (+)
CAST/EiJ	MGP_CASTEiJ_G0012816	pseudogene	Chr5:140961304-140962055 (+)
CBA/J	MGP_CBAJ_G0013062	pseudogene	Chr5:153871252-153872003 (+)
DBA/2J	MGP_DBA2J_G0013145	pseudogene	Chr5:136397623-136398374 (+)
FVB/NJ	MGP_FVBNJ_G0013145	pseudogene	Chr5:135559940-135560691 (+)
LP/J	MGP_LPJ_G0013214	pseudogene	Chr5:143189271-143190022 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013162	pseudogene	Chr5:156682203-156682954 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013614	pseudogene	Chr5:140758192-140758950 (+)
PWK/PhJ	MGP_PWKPhJ_G0012629	pseudogene	Chr5:135457689-135458440 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012419	pseudogene	Chr5:138327203-138328073 (+)
WSB/EiJ	MGP_WSBEiJ_G0012853	pseudogene	Chr5:141478498-141479249 (+)

Homology

• Gene Tree
  Gm3103
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000106435 (Evidence)
• NCBI Gene
  100041027

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106435	Ensembl Gene Model | MGI Sequence Detail	752	C57BL/6J
transcript	ENSMUST00000198073	Ensembl | MGI Sequence Detail	752	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm3103:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49398	Chr5:137886182-137886192 (+)	-146 bp
Tssr49399	Chr5:137886224-137886225 (+)	-108 bp
Tssr49400	Chr5:137886256-137886275 (+)	-67 bp