Iqcf6 Gene Detail

Summary

• Symbol
  Iqcf6
• Name
  IQ motif containing F6
• Synonyms
  100041096

• Feature Type
  protein coding gene
• IDs
  MGI:3781315
  NCBI Gene: 100041096
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:106503800-106504874 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 57.93 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781315	protein coding gene	Chr9:106503180-106504874 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0035240	protein coding gene	Chr9:108441530-108442623 (+)
A/J	MGP_AJ_G0035219	protein coding gene	Chr9:104511766-104512859 (+)
AKR/J	MGP_AKRJ_G0035151	protein coding gene	Chr9:107118561-107119654 (+)
BALB/cJ	MGP_BALBcJ_G0035213	protein coding gene	Chr9:104198573-104199666 (+)
C3H/HeJ	MGP_C3HHeJ_G0034923	protein coding gene	Chr9:107532326-107533419 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0035733	protein coding gene	Chr9:111431471-111432564 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032631	protein coding gene	Chr9:101999374-102000467 (+)
CAST/EiJ	MGP_CASTEiJ_G0034234	protein coding gene	Chr9:107450333-107451426 (+)
CBA/J	MGP_CBAJ_G0034891	protein coding gene	Chr9:115381564-115382657 (+)
DBA/2J	MGP_DBA2J_G0035052	protein coding gene	Chr9:103976736-103977829 (+)
FVB/NJ	MGP_FVBNJ_G0035000	protein coding gene	Chr9:102755187-102756280 (+)
LP/J	MGP_LPJ_G0035128	protein coding gene	Chr9:108657447-108658540 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0035039	protein coding gene	Chr9:116956632-116957725 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0035754	protein coding gene	Chr9:107381320-107382413 (+)
PWK/PhJ	MGP_PWKPhJ_G0033941	protein coding gene	Chr9:104280102-104281195 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0033776	protein coding gene	Chr9:107452232-107454911 (+)
WSB/EiJ	MGP_WSBEiJ_G0034355	protein coding gene	Chr9:107282202-107283295 (+)

Homology

• Human Ortholog
  IQCF6, IQ motif containing F6

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  IQCF6, IQ motif containing F6
  
• Links
  HGNC:35158

  NCBI Gene ID: 440956

  neXtProt AC: NX_A8MYZ5

  UniProt: A8MYZ5

  
  
• Chr Location
  3p21.2; chr3:51778561-51779241 (-)  GRCh38

---

• MGI Vertebrate Homology
  Iqcf6 stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: IQCF6
• Gene Tree
  Iqcf6
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Targeted
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  11 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  4
• UniProt
  2
• CCDS
  CCDS52913.2

• Ensembl
  ENSMUSG00000091129 (Evidence)
• NCBI Gene
  100041096

Representative Sequences			Length	Strain/Species
genomic	100041096	NCBI Gene Model | MGI Sequence Detail	1075	C57BL/6J
transcript	NM_001101628	RefSeq | MGI Sequence Detail	514	C57BL/6
polypeptide	NP_001095098	RefSeq | MGI Sequence Detail	146	C57BL/6

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR039887 IQ domain-containing protein F
  IPR000048 IQ motif, EF-hand binding site

References

• Summaries
  All 10

  Gene Ontology 1

  Phenotypes 2
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:293217 GemPharmatech, GemPharmatech Website. 2020;

TSS for Iqcf6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86931	Chr9:106503798-106503812 (+)	5 bp