Rpl28-ps2 Pseudogene Detail

Summary

• Symbol
  Rpl28-ps2
• Name
  ribosomal protein L28, pseudogene 2
• Synonyms
  Gm3661

• Feature Type
  pseudogene
• IDs
  MGI:3781837
  NCBI Gene: 100042091
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:83593986-83594461 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 37.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781837	pseudogene	Chr3:83593986-83594581 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012247	pseudogene	Chr3:83541727-83544988 (+)
A/J	MGP_AJ_G0012242	pseudogene	Chr3:80795075-80795663 (+)
AKR/J	MGP_AKRJ_G0012208	pseudogene	Chr3:82694354-82695291 (+)
BALB/cJ	MGP_BALBcJ_G0012222	pseudogene	Chr3:80865403-80866175 (+)
C3H/HeJ	MGP_C3HHeJ_G0012094	pseudogene	Chr3:82985103-82985625 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012537	pseudogene	Chr3:86675994-86678210 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010932	pseudogene	Chr3:76456955-76457513 (+)
CAST/EiJ	MGP_CASTEiJ_G0011869	pseudogene	Chr3:83176983-83178274 (+)
CBA/J	MGP_CBAJ_G0012069	pseudogene	Chr3:89592212-89592770 (+)
DBA/2J	MGP_DBA2J_G0012126	pseudogene	Chr3:80317817-80318824 (+)
FVB/NJ	MGP_FVBNJ_G0012129	pseudogene	Chr3:78595123-78595965 (+)
LP/J	MGP_LPJ_G0012195	pseudogene	Chr3:84514191-84515456 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012130	pseudogene	Chr3:95984617-95985269 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012542	pseudogene	Chr3:82499922-82500476 (+)
PWK/PhJ	MGP_PWKPhJ_G0011713	pseudogene	Chr3:80076489-80077108 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011530	pseudogene	Chr3:81674047-81674581 (+)
WSB/EiJ	MGP_WSBEiJ_G0011899	pseudogene	Chr3:82839815-82840324 (+)

Homology

• Gene Tree
  Rpl28-ps2
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rpl28-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000102137 (Evidence)
• NCBI Gene
  100042091

Representative Sequences			Length	Strain/Species
genomic	100042091	NCBI Gene Model | MGI Sequence Detail	476	C57BL/6J

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Rpl28-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29717	Chr3:83593982-83593988 (+)	-1 bp