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Pdcd5-ps Pseudogene Detail
Summary
  • Symbol
    Pdcd5-ps
  • Name
    programmed cell death 5, pseudogene
  • Synonyms
    Gm37810, Gm3837
  • Feature Type
    pseudogene
  • IDs
    MGI:3782009
    NCBI Gene: 100042424
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:189009640-189010020 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 94.42 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    105 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3782009
 pseudogene Chr1:189009519-189010044 (-)
129S1/SvImJ MGP_129S1SvImJ_G0010472
 pseudogene Chr1:196176693-196177073 (-)
A/J MGP_AJ_G0010461
 pseudogene Chr1:188160910-188161290 (-)
AKR/J MGP_AKRJ_G0010427
 pseudogene Chr1:193683160-193683540 (-)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0010366
 pseudogene Chr1:194557422-194557802 (-)
C57BL/6NJ MGP_C57BL6NJ_G0010707
 pseudogene Chr1:202456292-202456672 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0010905
 pseudogene Chr13:113804589-113804969 (+)
DBA/2J MGP_DBA2J_G0010364
 pseudogene Chr1:186897870-186898250 (-)
FVB/NJ no annotation
LP/J MGP_LPJ_G0010453
 pseudogene Chr1:197351884-197352264 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0010352
 pseudogene Chr1:216717477-216717857 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0011295
 pseudogene Chr13:104804674-104805054 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0010256
 pseudogene Chr1:193811964-193812344 (-)



Homology
more
  • Human Ortholog
    PDCD5, programmed cell death 5
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PDCD5, programmed cell death 5
  • Synonyms
    TFAR19
  • Links
    NCBI Gene ID: 9141
    neXtProt AC: NX_O14737
    UniProt: O14737

  • Chr Location
    19q13.11; chr19:32581190-32587453 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    16
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000102824 Ensembl Gene Model | MGI Sequence Detail 381 C57BL/6J ±  kb
transcript ENSMUST00000191699 Ensembl | MGI Sequence Detail 381 Not Applicable  
For the selected sequence
Other
Accession IDs
less
MGI:5611038
References
more
  • Summaries
    All 6
    Gene Ontology 1
  • Earliest
    J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
  • Latest
    J:164563 The Gene Ontology Consortium, Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs. 2010 Oct;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory