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Trav11n Pseudogene Detail
Summary
  • Symbol
    Trav11n
  • Name
    T cell receptor alpha variable 11N
  • Feature Type
    pseudogenic gene segment
  • IDs
    MGI:3782076
    NCBI Gene: 100042560
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr14:53372579-53373135 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.24 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    157 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3782076
 pseudogenic gene segment Chr14:53372579-53373135 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0002588
 pseudogenic gene segment Chr14:45994911-45995463 (+)
AKR/J MGP_AKRJ_G0002570
 pseudogenic gene segment Chr14:48107517-48108069 (+)
BALB/cJ MGP_BALBcJ_G0002570
 pseudogenic gene segment Chr1:168183203-168183755 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002714
 pseudogenic gene segment Chr14:48975722-48976278 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002510
 pseudogenic gene segment Chr14:44121606-44122158 (+)
CBA/J MGP_CBAJ_G0002537
 pseudogenic gene segment Chr14:51249285-51249837 (+)
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0002566
 pseudogenic gene segment Chr14:45712464-45713016 (+)
LP/J MGP_LPJ_G0002615
 pseudogenic gene segment Chr14:48308394-48308946 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0002719
 pseudogenic gene segment Chr14:46652363-46652915 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002421
 pseudogenic gene segment Chr14:43116760-43117316 (+)
WSB/EiJ MGP_WSBEiJ_G0002538
 pseudogenic gene segment Chr14:47002222-47002512 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    16
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100042560 NCBI Gene Model | MGI Sequence Detail 557 C57BL/6J ±  kb
For the selected sequence
References
more
  • Summaries
    All 7
    Phenotypes 2
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
06/12/2024
MGI 6.13 		The Jackson Laboratory