Gm4117 Gene Detail

Summary

• Symbol
  Gm4117
• Name
  predicted gene 4117

• Feature Type
  lncRNA gene
• IDs
  MGI:3782293
  NCBI Gene: 100042940
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:89881816-89938889 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 45.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1465 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782293	lncRNA gene	Chr13:89881816-90035285 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015260	unclassified non-coding RNA gene	Chr13:90919557-91074629 (+)
A/J	MGP_AJ_G0015234	unclassified non-coding RNA gene	Chr13:87544761-87699744 (+)
AKR/J	MGP_AKRJ_G0015197	unclassified non-coding RNA gene	Chr13:90221145-90370571 (+)
BALB/cJ	MGP_BALBcJ_G0015196	unclassified non-coding RNA gene	Chr13:88211880-88363517 (+)
C3H/HeJ	MGP_C3HHeJ_G0015020	unclassified non-coding RNA gene	Chr13:89959375-90111704 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015653	unclassified non-coding RNA gene	Chr13:93784820-93932976 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013395	unclassified non-coding RNA gene	Chr13:83610822-83753176 (+)
CAST/EiJ	MGP_CASTEiJ_G0014573	unclassified non-coding RNA gene	Chr13:89149447-89302184 (+)
CBA/J	MGP_CBAJ_G0014999	unclassified non-coding RNA gene	Chr13:97425667-97600482 (+)
DBA/2J	MGP_DBA2J_G0015092	unclassified non-coding RNA gene	Chr13:87320260-87466938 (+)
FVB/NJ	MGP_FVBNJ_G0015103	unclassified non-coding RNA gene	Chr13:86164350-86310767 (+)
LP/J	MGP_LPJ_G0015173	unclassified non-coding RNA gene	Chr13:91065679-91217506 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015130	unclassified non-coding RNA gene	Chr13:97807572-97989743 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015692	unclassified non-coding RNA gene	Chr13:89625365-89785791 (+)
PWK/PhJ	MGP_PWKPhJ_G0014365	unclassified non-coding RNA gene	Chr13:86050284-86197109 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014152	unclassified non-coding RNA gene	Chr13:85860928-86014835 (+)
WSB/EiJ	MGP_WSBEiJ_G0014676	unclassified non-coding RNA gene	Chr13:90101691-90260792 (+)

Homology

• Gene Tree
  Gm4117
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm4117
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000089940 (Evidence)
• NCBI Gene
  100042940

Representative Sequences			Length	Strain/Species
genomic	100042940	NCBI Gene Model | MGI Sequence Detail	57074	C57BL/6J
transcript	AK040967	GenBank | ENA | DDBJ | MGI Sequence Detail	2691	C57BL/6J

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm4117:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120590	Chr13:89887570-89887590 (+)	5,764 bp
Tssr120591	Chr13:89887598-89887612 (+)	5,789 bp