Gm4271 Pseudogene Detail

Summary

• Symbol
  Gm4271
• Name
  predicted gene 4271

• Feature Type
  pseudogene
• IDs
  MGI:3782448
  NCBI Gene: 100043158
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:37043534-37045643 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 19.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782448	pseudogene	Chr17:37043534-37045643 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040185	pseudogene	Chr17:37080097-37123150 (+)
A/J	MGP_AJ_G0040171	pseudogene	Chr17:35918472-35943755 (+)
AKR/J	MGP_AKRJ_G0040102	pseudogene	Chr17:36347450-36373786 (+)
BALB/cJ	MGP_BALBcJ_G0040163	pseudogene	Chr17:36084395-36133499 (+)
C3H/HeJ	MGP_C3HHeJ_G0039798	pseudogene	Chr17:36398324-36400457 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040757	pseudogene	Chr17:38632319-38634428 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037207	pseudogene	Chr17:33486482-33488422 (-)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039776	pseudogene	Chr17:40153786-40270352 (+)
DBA/2J	MGP_DBA2J_G0039972	pseudogene	Chr17:35288519-35344705 (+)
FVB/NJ	MGP_FVBNJ_G0039932	pseudogene	Chr17:34912291-34994450 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039923	pseudogene	Chr17:38977705-39071256 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0038577	pseudogene	Chr17:33646604-33648695 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038278	pseudogene	Chr17:34510398-34512338 (-)
WSB/EiJ	MGP_WSBEiJ_G0039107	pseudogene	Chr17:36448953-36678705 (-)

Homology

• Gene Tree
  Gm4271
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm4271
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000092521 (Evidence)
• NCBI Gene
  100043158

Representative Sequences			Length	Strain/Species
genomic	100043158	NCBI Gene Model | MGI Sequence Detail	2110	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53