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Trav3n-3 Gene Detail
Summary
  • Symbol
    Trav3n-3
  • Name
    T cell receptor alpha variable 3N-3
  • Synonyms
    100043282, Gm10901
Location &
Maps
more
  • Sequence Map
    Chr14:53521126-53521632 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.30 cM
Strain
Comparison
more
  • SNPs within 2kb
    1 from dbSNP Build 142
  • Strain Annotations
    6
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3782518
 gene segment Chr14:53521042-53521632 (+)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002658
 gene segment Chr14:49992609-49993194 (+)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J MGP_LPJ_G0002563
 gene segment Chr14:48550139-48550724 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002491
 gene segment Chr14:50895227-50895812 (+)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0002405
 gene segment Chr14:41949172-42575320 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002336
 gene segment Chr14:42462081-43315708 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRAV5, T cell receptor alpha variable 5
  • Vertebrate Orthologs
    10
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV5, T cell receptor alpha variable 5
  • Synonyms
    TCRAV15S1, TCRAV5S1
  • Links
    NCBI Gene ID: 28688
    UniProt: A0A0B4J249

  • Chr Location
    14q11.2; chr14:21749178-21749705 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    15
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100043282 NCBI Gene Model | MGI Sequence Detail 507 C57BL/6J ±  kb
transcript AK042313 GenBank | ENA | DDBJ | MGI Sequence Detail 1584 C57BL/6J  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
References
more
  • Summaries
    All 8
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory