Gm4371 Pseudogene Detail

Summary

• Symbol
  Gm4371
• Name
  predicted gene 4371
• Synonyms
  Gm8854

• Feature Type
  pseudogene
• IDs
  MGI:3782556
  NCBI Gene: 100043335
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:96080681-96101351 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 52.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  880 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782556	pseudogene	Chr15:96080681-96101351 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  19 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  3
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm4371
• Find Mice (IMSR)
  8 strains or lines available

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• NCBI Gene
  100043335

Representative Sequences			Length	Strain/Species
genomic	100043335	NCBI Gene Model | MGI Sequence Detail	20671	C57BL/6J
transcript	NR_028311	RefSeq | MGI Sequence Detail	1610	C57BL/6

Molecular
Reagents

• 
  

  Microarray probesets 2

Other
Accession IDs

MGI:3644159

References

• Summaries
  All 26

  Phenotypes 19
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Gm4371:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132813	Chr15:96083615-96083653 (+)	2,953 bp