Gm4473 Gene Detail

Summary

• Symbol
  Gm4473
• Name
  predicted gene 4473

• Feature Type
  lncRNA gene
• IDs
  MGI:3782657
  NCBI Gene: 100043488
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:120735062-120737793 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 68.86 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782657	lncRNA gene	Chr10:120734934-120740581 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002906	antisense lncRNA gene	Chr10:124104413-124107121 (+)
A/J	MGP_AJ_G0002883	antisense lncRNA gene	Chr10:119187248-119189842 (+)
AKR/J	MGP_AKRJ_G0002864	antisense lncRNA gene	Chr10:122742480-122745313 (+)
BALB/cJ	MGP_BALBcJ_G0002871	antisense lncRNA gene	Chr10:119577267-119580007 (+)
C3H/HeJ	MGP_C3HHeJ_G0002827	antisense lncRNA gene	Chr10:122942514-122945246 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003014	antisense lncRNA gene	Chr10:128326560-128330229 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002556	antisense lncRNA gene	Chr10:113524607-113527219 (+)
CAST/EiJ	MGP_CASTEiJ_G0002799	antisense lncRNA gene	Chr10:123286687-123290054 (+)
CBA/J	MGP_CBAJ_G0002823	antisense lncRNA gene	Chr10:133563675-133566313 (+)
DBA/2J	MGP_DBA2J_G0002830	antisense lncRNA gene	Chr10:118320388-118323013 (+)
FVB/NJ	MGP_FVBNJ_G0002849	antisense lncRNA gene	Chr10:117303834-117306665 (+)
LP/J	MGP_LPJ_G0002906	antisense lncRNA gene	Chr10:124649969-124654269 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002838	antisense lncRNA gene	Chr10:136128364-136130963 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003017	antisense lncRNA gene	Chr10:122750434-122753054 (+)
PWK/PhJ	MGP_PWKPhJ_G0002757	antisense lncRNA gene	Chr10:118422473-118427204 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002706	antisense lncRNA gene	Chr10:121664230-121667145 (+)
WSB/EiJ	MGP_WSBEiJ_G0002828	antisense lncRNA gene	Chr10:122996981-122999689 (+)

Homology

• Gene Tree
  Gm4473
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000086522 (Evidence)
• NCBI Gene
  100043488

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086522	Ensembl Gene Model | MGI Sequence Detail	2732	C57BL/6J
transcript	ENSMUST00000145987	Ensembl | MGI Sequence Detail	657	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm4473:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96008	Chr10:120735802-120735806 (+)	742 bp