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Krtap5-20 Gene Detail
Summary
  • Symbol
    Krtap5-20
  • Name
    keratin associated protein 5-20
  • Synonyms
    Gm4559
  • Feature Type
    protein coding gene
  • IDs
    MGI:3782743
    NCBI Gene: 100043627
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr7:141827501-141828100 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 87.84 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    246 from dbSNP Build 142
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3782743
 protein coding gene Chr7:141827501-141828100 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033250
 protein coding gene Chr7:147493273-147519879 (-)
A/J MGP_AJ_G0033232
 protein coding gene Chr7:143234200-143241956 (-)
AKR/J MGP_AKRJ_G0033165
 protein coding gene Chr7:147299106-147303685 (-)
BALB/cJ MGP_BALBcJ_G0033234
 protein coding gene Chr7:142992623-142993299 (-)
C3H/HeJ MGP_C3HHeJ_G0032949
 protein coding gene Chr7:147001663-147002579 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033744
 protein coding gene Chr7:152891579-152892408 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0032921
 protein coding gene Chr7:158094700-158095366 (-)
DBA/2J MGP_DBA2J_G0033075
 protein coding gene Chr7:141222712-141223348 (-)
FVB/NJ MGP_FVBNJ_G0033023
 protein coding gene Chr7:141106449-141111025 (-)
LP/J MGP_LPJ_G0033167
 protein coding gene Chr7:149002368-149020164 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033058
 protein coding gene Chr7:158681104-158683100 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033763
 protein coding gene Chr7:146229100-146234946 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    KRTAP5-10, keratin associated protein 5-10
  • Vertebrate Orthologs
    6
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    KRTAP5-10, keratin associated protein 5-10
  • Synonyms
    KRTAP5.10
  • Links
    NCBI Gene ID: 387273
    neXtProt AC: NX_Q6L8G5
    UniProt: Q6L8G5

  • Chr Location
    11q13.4; chr11:71565563-71566735 (+)  GRCh38
  • Human Ortholog
    KRTAP5-11, keratin associated protein 5-11
  • Synonyms
    KRTAP5.11, KRTAP5-5, KRTAP5-6
  • Links
    NCBI Gene ID: 440051
    neXtProt AC: NX_Q6L8G4
    UniProt: Q6L8G4

  • Chr Location
    11q13.4
  • Human Ortholog
    KRTAP5-2, keratin associated protein 5-2
  • Synonyms
    KRTAP5.2, KRTAP5-8
  • Links
    NCBI Gene ID: 440021
    neXtProt AC: NX_Q701N4
    UniProt: Q701N4

  • Chr Location
    11p15.5
  • Human Ortholog
    KRTAP5-3, keratin associated protein 5-3
  • Synonyms
    KRTAP5.3, KRTAP5-9
  • Links
    NCBI Gene ID: 387266
    neXtProt AC: NX_Q6L8H2
    UniProt: Q6L8H2

  • Chr Location
    11p15.5; chr11:1607565-1608463 (-)  GRCh38
  • Human Ortholog
    KRTAP5-7, keratin associated protein 5-7
  • Synonyms
    KRTAP5-3, KRTAP5.7
  • Links
    NCBI Gene ID: 440050
    neXtProt AC: NX_Q6L8G8
    UniProt: Q6L8G8

  • Chr Location
    11q13.4; chr11:71527267-71528669 (+)  GRCh38
  • Human Ortholog
    KRTAP5-9, keratin associated protein 5-9
  • Synonyms
    KRN1, KRTAP5-1, KRTAP5.9
  • Links
    NCBI Gene ID: 3846
    neXtProt AC: NX_P26371
    UniProt: P26371

  • Chr Location
    11q13.4
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 100043627 NCBI Gene Model | MGI Sequence Detail 600 C57BL/6J ±  kb
transcript NM_001199309 RefSeq | MGI Sequence Detail 600 C57BL/6  
polypeptide NP_001186238 RefSeq | MGI Sequence Detail 199 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
Other
Accession IDs
less
MGI:7580769
References
more
  • Summaries
    All 12
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
  • Latest
    J:187438 Peters J, et al., Identification and characterisation of imprinted genes in the mouse. Brief Funct Genomic Proteomic. 2004 Feb;2(4):320-33
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory