Gm4577 Gene Detail

Summary

• Symbol
  Gm4577
• Name
  predicted gene 4577

• Feature Type
  lncRNA gene
• IDs
  MGI:3782760
  NCBI Gene: 105246271
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:36014969-36019263 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782760	lncRNA gene	Chr17:36014788-36019263 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003400	antisense lncRNA gene	Chr17:35888466-35892897 (+)
A/J	MGP_AJ_G0003377	antisense lncRNA gene	Chr17:34781821-34786397 (+)
AKR/J	MGP_AKRJ_G0003361	antisense lncRNA gene	Chr17:35210782-35215213 (+)
BALB/cJ	MGP_BALBcJ_G0003366	antisense lncRNA gene	Chr17:34921534-34925946 (+)
C3H/HeJ	MGP_C3HHeJ_G0003318	antisense lncRNA gene	Chr17:35669790-35674218 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003507	antisense lncRNA gene	Chr17:37358934-37363340 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003023	antisense lncRNA gene	Chr17:32479226-32483794 (+)
CAST/EiJ	MGP_CASTEiJ_G0003281	antisense lncRNA gene	Chr17:35772386-35776796 (+)
CBA/J	MGP_CBAJ_G0003315	antisense lncRNA gene	Chr17:38932071-38939428 (+)
DBA/2J	MGP_DBA2J_G0003321	antisense lncRNA gene	Chr17:34093444-34097856 (+)
FVB/NJ	MGP_FVBNJ_G0003339	antisense lncRNA gene	Chr17:33886502-33892091 (+)
LP/J	MGP_LPJ_G0003394	antisense lncRNA gene	Chr17:36272175-36276671 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003327	antisense lncRNA gene	Chr17:37705542-37709956 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003508	antisense lncRNA gene	Chr17:35525329-35529760 (+)
PWK/PhJ	MGP_PWKPhJ_G0003240	antisense lncRNA gene	Chr17:32947517-32952059 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003185	antisense lncRNA gene	Chr17:33562132-33566523 (+)
WSB/EiJ	MGP_WSBEiJ_G0003316	antisense lncRNA gene	Chr17:35670046-35676148 (+)

Homology

• Gene Tree
  Gm4577
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  10
• Gene trapped
  9
• Targeted
  1
• Genomic Mutations
  1 involving Gm4577
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000086867 (Evidence)
• NCBI Gene
  105246271

Representative Sequences			Length	Strain/Species
genomic	105246271	NCBI Gene Model | MGI Sequence Detail	4295	C57BL/6J
transcript	NR_168271	RefSeq | MGI Sequence Detail	662	C57BL/6

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53