Gm15520 Gene Detail

Summary

• Symbol
  Gm15520
• Name
  predicted gene 15520

• Feature Type
  lncRNA gene
• IDs
  MGI:3782967
  NCBI Gene: 625222
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:28971095-28981495 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 14.39 cM

Strain
Comparison

• SNPs within 2kb
  363 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782967	lncRNA gene	Chr9:28945803-29003280 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004612	antisense lncRNA gene	Chr9:26613624-26624024 (+)
A/J	MGP_AJ_G0004592	antisense lncRNA gene	Chr9:25995866-26006267 (+)
AKR/J	MGP_AKRJ_G0004576	antisense lncRNA gene	Chr9:26512679-26524744 (+)
BALB/cJ	MGP_BALBcJ_G0004577	antisense lncRNA gene	Chr9:25901992-25912392 (+)
C3H/HeJ	MGP_C3HHeJ_G0004526	antisense lncRNA gene	Chr9:26884949-26895349 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004726	antisense lncRNA gene	Chr9:27585556-27595956 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004177	antisense lncRNA gene	Chr9:24881350-24892180 (+)
CAST/EiJ	MGP_CASTEiJ_G0004484	antisense lncRNA gene	Chr9:26729792-26740191 (+)
CBA/J	MGP_CBAJ_G0004520	antisense lncRNA gene	Chr9:28483211-28496864 (+)
DBA/2J	MGP_DBA2J_G0004535	antisense lncRNA gene	Chr9:26012158-26022558 (+)
FVB/NJ	MGP_FVBNJ_G0004552	antisense lncRNA gene	Chr9:25440052-25450633 (+)
LP/J	MGP_LPJ_G0004616	antisense lncRNA gene	Chr9:26787752-26798153 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004541	antisense lncRNA gene	Chr9:30188936-30199549 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004726	antisense lncRNA gene	Chr9:26533776-26544191 (+)
PWK/PhJ	MGP_PWKPhJ_G0004437	antisense lncRNA gene	Chr9:25946708-25957117 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004377	antisense lncRNA gene	Chr9:26605413-26615839 (+)
WSB/EiJ	MGP_WSBEiJ_G0004525	antisense lncRNA gene	Chr9:26276582-26286982 (+)

Homology

• Gene Tree
  Gm15520
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000085449 (Evidence)
• NCBI Gene
  625222

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085449	Ensembl Gene Model | MGI Sequence Detail	10401	C57BL/6J
transcript	ENSMUST00000132097	Ensembl | MGI Sequence Detail	1203	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;