Gm15522 Gene Detail

Summary

• Symbol
  Gm15522
• Name
  predicted gene 15522

• Feature Type
  lncRNA gene
• IDs
  MGI:3782969
  NCBI Gene: 108169039
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:34808062-34809821 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 17.91 cM

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782969	lncRNA gene	Chr5:34808038-34809821 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004059	antisense lncRNA gene	Chr5:32898408-32900167 (+)
A/J	MGP_AJ_G0004040	antisense lncRNA gene	Chr5:31811716-31813475 (+)
AKR/J	MGP_AKRJ_G0004018	antisense lncRNA gene	Chr5:33038078-33039837 (+)
BALB/cJ	MGP_BALBcJ_G0004026	antisense lncRNA gene	Chr5:32345070-32346829 (+)
C3H/HeJ	MGP_C3HHeJ_G0003972	antisense lncRNA gene	Chr5:33072955-33074714 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004175	antisense lncRNA gene	Chr5:34786307-34788066 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003654	antisense lncRNA gene	Chr5:29592008-29593685 (+)
CAST/EiJ	MGP_CASTEiJ_G0003936	antisense lncRNA gene	Chr5:32139612-32141352 (+)
CBA/J	MGP_CBAJ_G0003966	antisense lncRNA gene	Chr5:35574965-35576724 (+)
DBA/2J	MGP_DBA2J_G0003981	antisense lncRNA gene	Chr5:31981412-31983171 (+)
FVB/NJ	MGP_FVBNJ_G0004000	antisense lncRNA gene	Chr5:31421769-31423529 (+)
LP/J	MGP_LPJ_G0004061	antisense lncRNA gene	Chr5:33317503-33319262 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003989	antisense lncRNA gene	Chr5:36421831-36423591 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004170	antisense lncRNA gene	Chr5:32544755-32546514 (+)
PWK/PhJ	MGP_PWKPhJ_G0003889	antisense lncRNA gene	Chr5:31127732-31129504 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003834	antisense lncRNA gene	Chr5:31976869-31978601 (+)
WSB/EiJ	MGP_WSBEiJ_G0003971	antisense lncRNA gene	Chr5:32623665-32625424 (+)

Homology

• Gene Tree
  Gm15522
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  23 phenotype references
  

• All Mutations and Alleles
  11
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Gene trapped
  2
• Radiation induced
  5
• Spontaneous
  1
• Genomic Mutations
  9 involving Gm15522
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000085166 (Evidence)
• NCBI Gene
  108169039

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085166	Ensembl Gene Model | MGI Sequence Detail	1760	C57BL/6J
transcript	ENSMUST00000134467	Ensembl | MGI Sequence Detail	785	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 30

  Diseases 1

  Phenotypes 23
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Gm15522:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45896	Chr5:34808031-34808067 (+)	-13 bp