Gm15524 Gene Detail

Summary

• Symbol
  Gm15524
• Name
  predicted gene 15524

• Feature Type
  lncRNA gene
• IDs
  MGI:3782971
  NCBI Gene: 102631986
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:56736703-56739749 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 24.53 cM

Strain
Comparison

• SNPs within 2kb
  219 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782971	lncRNA gene	Chr12:56731111-56741772 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003137	antisense lncRNA gene	Chr12:55818180-55821234 (-)
A/J	MGP_AJ_G0003114	antisense lncRNA gene	Chr12:53782041-53785095 (-)
AKR/J	MGP_AKRJ_G0003094	antisense lncRNA gene	Chr12:55483586-55486648 (-)
BALB/cJ	MGP_BALBcJ_G0003101	antisense lncRNA gene	Chr12:54131707-54134757 (-)
C3H/HeJ	MGP_C3HHeJ_G0003057	antisense lncRNA gene	Chr12:55548897-55551951 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003244	antisense lncRNA gene	Chr12:57474220-57477270 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002778	antisense lncRNA gene	Chr12:52248343-52251499 (-)
CAST/EiJ	MGP_CASTEiJ_G0003026	antisense lncRNA gene	Chr12:50444342-50448167 (-)
CBA/J	MGP_CBAJ_G0003054	antisense lncRNA gene	Chr12:59486921-59489975 (-)
DBA/2J	MGP_DBA2J_G0003059	antisense lncRNA gene	Chr12:53685980-53689030 (-)
FVB/NJ	MGP_FVBNJ_G0003079	antisense lncRNA gene	Chr12:52987797-52990851 (-)
LP/J	MGP_LPJ_G0003134	antisense lncRNA gene	Chr12:55789914-55792968 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003068	antisense lncRNA gene	Chr12:61045787-61048845 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003248	antisense lncRNA gene	Chr12:54923634-54926696 (-)
PWK/PhJ	MGP_PWKPhJ_G0002984	antisense lncRNA gene	Chr12:48058095-48061508 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002928	antisense lncRNA gene	Chr12:49361870-49364889 (-)
WSB/EiJ	MGP_WSBEiJ_G0003057	antisense lncRNA gene	Chr12:55449170-55452217 (-)

Homology

• Gene Tree
  Gm15524
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15524
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  3

• Ensembl
  ENSMUSG00000089894 (Evidence)
• NCBI Gene
  102631986

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089894	Ensembl Gene Model | MGI Sequence Detail	3047	C57BL/6J
transcript	ENSMUST00000159874	Ensembl | MGI Sequence Detail	463	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15524:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116410	Chr12:56739698-56739706 (-)	47 bp