Gm15577 Gene Detail

Summary

• Symbol
  Gm15577
• Name
  predicted gene 15577

• Feature Type
  lncRNA gene
• IDs
  MGI:3783025
  NCBI Gene: 100502679
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:156609500-156626417 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 80.84 cM

Strain
Comparison

• SNPs within 2kb
  551 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783025	lncRNA gene	Chr3:156609500-156626417 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003865	antisense lncRNA gene	Chr3:161020393-161036982 (-)
A/J	MGP_AJ_G0003845	antisense lncRNA gene	Chr3:155152795-155169512 (-)
AKR/J	MGP_AKRJ_G0003822	antisense lncRNA gene	Chr3:159263272-159288943 (-)
BALB/cJ	MGP_BALBcJ_G0003832	antisense lncRNA gene	Chr3:154950161-154967236 (-)
C3H/HeJ	MGP_C3HHeJ_G0003777	antisense lncRNA gene	Chr3:159657578-159674102 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003976	antisense lncRNA gene	Chr3:166270349-166289344 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003476	antisense lncRNA gene	Chr3:149777388-149793573 (-)
CAST/EiJ	MGP_CASTEiJ_G0003743	antisense lncRNA gene	Chr3:159807997-159826124 (-)
CBA/J	MGP_CBAJ_G0003771	antisense lncRNA gene	Chr3:172228826-172250583 (-)
DBA/2J	MGP_DBA2J_G0003786	antisense lncRNA gene	Chr3:154198588-154215256 (-)
FVB/NJ	MGP_FVBNJ_G0003807	antisense lncRNA gene	Chr3:151535021-151551904 (-)
LP/J	MGP_LPJ_G0003867	antisense lncRNA gene	Chr3:162350468-162367988 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003794	antisense lncRNA gene	Chr3:180820187-180848438 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003975	antisense lncRNA gene	Chr3:158945557-158962434 (-)
PWK/PhJ	MGP_PWKPhJ_G0003699	antisense lncRNA gene	Chr3:154146948-154164410 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003644	antisense lncRNA gene	Chr3:157144381-157161137 (-)
WSB/EiJ	MGP_WSBEiJ_G0003779	antisense lncRNA gene	Chr3:159933910-159951417 (-)

Homology

• Gene Tree
  Gm15577
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000086708 (Evidence)
• NCBI Gene
  100502679

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086708	Ensembl Gene Model | MGI Sequence Detail	16918	C57BL/6J
transcript	ENSMUST00000144350	Ensembl | MGI Sequence Detail	2293	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;

TSS for Gm15577:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36288	Chr3:156626388-156626422 (-)	12 bp