Gm15640 Gene Detail

Summary

• Symbol
  Gm15640
• Name
  predicted gene 15640

• Feature Type
  lncRNA gene
• IDs
  MGI:3783084
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:45756640-45761969 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 30.45 cM

Strain
Comparison

• SNPs within 2kb
  301 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783084	lncRNA gene	Chr16:45756640-45761969 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003351	antisense lncRNA gene	Chr16:44740957-44743913 (+)
A/J	MGP_AJ_G0003327	antisense lncRNA gene	Chr16:42743610-42746567 (+)
AKR/J	MGP_AKRJ_G0003310	antisense lncRNA gene	Chr16:44140428-44143384 (+)
BALB/cJ	MGP_BALBcJ_G0003316	antisense lncRNA gene	Chr16:42763089-42766045 (+)
C3H/HeJ	MGP_C3HHeJ_G0003269	antisense lncRNA gene	Chr16:44297159-44300117 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003457	antisense lncRNA gene	Chr16:45764078-45767034 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002975	antisense lncRNA gene	Chr16:43096303-43099275 (+)
CAST/EiJ	MGP_CASTEiJ_G0003233	antisense lncRNA gene	Chr16:44502046-44505028 (+)
CBA/J	MGP_CBAJ_G0003266	antisense lncRNA gene	Chr16:47673145-47676103 (+)
DBA/2J	MGP_DBA2J_G0003271	antisense lncRNA gene	Chr16:42475714-42478670 (+)
FVB/NJ	MGP_FVBNJ_G0003290	antisense lncRNA gene	Chr16:42387698-42390654 (+)
LP/J	MGP_LPJ_G0003344	antisense lncRNA gene	Chr16:44495171-44498127 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003279	antisense lncRNA gene	Chr16:47084970-47087926 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003460	antisense lncRNA gene	Chr16:44160375-44163331 (+)
PWK/PhJ	MGP_PWKPhJ_G0003193	antisense lncRNA gene	Chr16:42848948-42851907 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003136	antisense lncRNA gene	Chr16:44088661-44091618 (+)
WSB/EiJ	MGP_WSBEiJ_G0003267	antisense lncRNA gene	Chr16:44253912-44256861 (+)

Homology

• Gene Tree
  Gm15640
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085781 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085781	Ensembl Gene Model | MGI Sequence Detail	5330	C57BL/6J
transcript	ENSMUST00000152070	Ensembl | MGI Sequence Detail	2900	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15640:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr138635	Chr16:45756670-45756680 (+)	35 bp