Gm15654 Pseudogene Detail

Summary

• Symbol
  Gm15654
• Name
  predicted gene 15654

• Feature Type
  pseudogene
• IDs
  MGI:3783098
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:69072790-69073089 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 33.88 cM

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783098	pseudogene	Chr8:69072790-69073089 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040667	pseudogene	Chr8:68754783-68755082 (+)
A/J	MGP_AJ_G0040666	pseudogene	Chr8:65965096-65965395 (+)
AKR/J	MGP_AKRJ_G0040592	pseudogene	Chr8:67773935-67774233 (+)
BALB/cJ	MGP_BALBcJ_G0040656	pseudogene	Chr8:66171165-66171464 (+)
C3H/HeJ	MGP_C3HHeJ_G0040292	pseudogene	Chr8:68499710-68500008 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0041355	pseudogene	Chr8:71323929-71324228 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037485	pseudogene	Chr8:60866315-60866614 (+)
CAST/EiJ	MGP_CASTEiJ_G0039332	pseudogene	Chr8:67932482-67932781 (+)
CBA/J	MGP_CBAJ_G0040260	pseudogene	Chr8:74015356-74015654 (+)
DBA/2J	MGP_DBA2J_G0040471	pseudogene	Chr8:65694973-65695271 (+)
FVB/NJ	MGP_FVBNJ_G0040394	pseudogene	Chr8:64853512-64853811 (+)
LP/J	MGP_LPJ_G0040508	pseudogene	Chr8:68860987-68861286 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040396	pseudogene	Chr8:76692135-76692434 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041398	pseudogene	Chr8:68040292-68040591 (+)
PWK/PhJ	MGP_PWKPhJ_G0038986	pseudogene	Chr8:64930306-64930605 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038698	pseudogene	Chr8:67041207-67041506 (-)
WSB/EiJ	MGP_WSBEiJ_G0039584	pseudogene	Chr8:68421281-68421579 (+)

Homology

• Gene Tree
  Gm15654
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15654
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085487 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085487	Ensembl Gene Model | MGI Sequence Detail	300	C57BL/6J
transcript	ENSMUST00000152660	Ensembl | MGI Sequence Detail	300	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;