Gm15684 Gene Detail

Summary

• Symbol
  Gm15684
• Name
  predicted gene 15684

• Feature Type
  lncRNA gene
• IDs
  MGI:3783126
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:120762933-120772026 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 68.84 cM

Strain
Comparison

• SNPs within 2kb
  322 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783126	lncRNA gene	Chr8:120762933-120772026 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004592	antisense lncRNA gene	Chr8:123411345-123420439 (-)
A/J	MGP_AJ_G0004572	antisense lncRNA gene	Chr8:118311634-118320724 (-)
AKR/J	MGP_AKRJ_G0004556	antisense lncRNA gene	Chr8:121745760-121754855 (-)
BALB/cJ	MGP_BALBcJ_G0004557	antisense lncRNA gene	Chr8:118520677-118529778 (-)
C3H/HeJ	MGP_C3HHeJ_G0004506	antisense lncRNA gene	Chr8:122473153-122482253 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004706	antisense lncRNA gene	Chr8:127521189-127530275 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004157	antisense lncRNA gene	Chr8:111200949-111210085 (-)
CAST/EiJ	MGP_CASTEiJ_G0004464	antisense lncRNA gene	Chr8:122436306-122445474 (-)
CBA/J	MGP_CBAJ_G0004500	antisense lncRNA gene	Chr8:132172711-132181907 (-)
DBA/2J	MGP_DBA2J_G0004515	antisense lncRNA gene	Chr8:117532081-117541155 (-)
FVB/NJ	MGP_FVBNJ_G0004532	antisense lncRNA gene	Chr8:116587345-116597079 (-)
LP/J	MGP_LPJ_G0004596	antisense lncRNA gene	Chr8:123547782-123556888 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004521	antisense lncRNA gene	Chr8:134606337-134615536 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004706	antisense lncRNA gene	Chr8:121908915-121918018 (-)
PWK/PhJ	MGP_PWKPhJ_G0004417	antisense lncRNA gene	Chr8:117292192-117301936 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004358	antisense lncRNA gene	Chr8:120603245-120612354 (-)
WSB/EiJ	MGP_WSBEiJ_G0004505	antisense lncRNA gene	Chr8:122636994-122646060 (-)

Homology

• Gene Tree
  Gm15684
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000089776 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089776	Ensembl Gene Model | MGI Sequence Detail	9094	C57BL/6J
transcript	ENSMUST00000160605	Ensembl | MGI Sequence Detail	1814	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15684:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr83176	Chr8:120769500-120769507 (-)	2,522 bp