Sox5os2 Gene Detail

Summary

• Symbol
  Sox5os2
• Name
  SRY (sex determining region Y)-box 5, opposite strand 2
• Synonyms
  Gm15685

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3783127
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:144426951-144447142 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 76.77 cM

Strain
Comparison

• SNPs within 2kb
  263 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783127	antisense lncRNA gene	Chr6:144426951-144447142 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004387	antisense lncRNA gene	Chr6:149415198-149435336 (+)
A/J	MGP_AJ_G0004364	antisense lncRNA gene	Chr6:143521459-143541539 (+)
AKR/J	MGP_AKRJ_G0004346	antisense lncRNA gene	Chr6:147783249-147803519 (+)
BALB/cJ	MGP_BALBcJ_G0004350	antisense lncRNA gene	Chr6:143277199-143299656 (+)
C3H/HeJ	MGP_C3HHeJ_G0004299	antisense lncRNA gene	Chr6:147801602-147826909 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004500	antisense lncRNA gene	Chr6:153433807-153455065 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003960	antisense lncRNA gene	Chr6:142274038-142296639 (+)
CAST/EiJ	MGP_CASTEiJ_G0004259	antisense lncRNA gene	Chr6:147418692-147439733 (+)
CBA/J	MGP_CBAJ_G0004293	antisense lncRNA gene	Chr6:159278636-159307837 (+)
DBA/2J	MGP_DBA2J_G0004308	antisense lncRNA gene	Chr6:142324385-142344518 (+)
FVB/NJ	MGP_FVBNJ_G0004325	antisense lncRNA gene	Chr6:141062133-141082120 (+)
LP/J	MGP_LPJ_G0004387	antisense lncRNA gene	Chr6:149512715-149532458 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004316	antisense lncRNA gene	Chr6:163120529-163142379 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004497	antisense lncRNA gene	Chr6:147633527-147653728 (+)
PWK/PhJ	MGP_PWKPhJ_G0004212	antisense lncRNA gene	Chr6:140816685-140837406 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004154	antisense lncRNA gene	Chr6:145767712-145789549 (+)
WSB/EiJ	MGP_WSBEiJ_G0004298	antisense lncRNA gene	Chr6:148203792-148223821 (+)

Homology

• Gene Tree
  Sox5os2
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000087157 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087157	Ensembl Gene Model | MGI Sequence Detail	20192	C57BL/6J
transcript	ENSMUST00000156443	Ensembl | MGI Sequence Detail	627	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;