Gm15709 Pseudogene Detail

Summary

• Symbol
  Gm15709
• Name
  predicted gene 15709

• Feature Type
  pseudogene
• IDs
  MGI:3783150
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:144343412-144343624 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 83.59 cM

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783150	pseudogene	Chr5:144343412-144343624 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013308	pseudogene	Chr5:149753855-149754067 (+)
A/J	MGP_AJ_G0013288	pseudogene	Chr5:143324082-143324294 (+)
AKR/J	MGP_AKRJ_G0013252	pseudogene	Chr5:147787248-147787460 (+)
BALB/cJ	MGP_BALBcJ_G0013266	pseudogene	Chr5:144590531-144590743 (+)
C3H/HeJ	MGP_C3HHeJ_G0013115	pseudogene	Chr5:148632973-148633185 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013635	pseudogene	Chr5:155227756-155227968 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011779	pseudogene	Chr5:137105783-137105995 (+)
CAST/EiJ	MGP_CASTEiJ_G0012836	pseudogene	Chr5:148167598-148167810 (+)
CBA/J	MGP_CBAJ_G0013083	pseudogene	Chr5:161604081-161604293 (+)
DBA/2J	MGP_DBA2J_G0013167	pseudogene	Chr5:143070513-143070725 (+)
FVB/NJ	MGP_FVBNJ_G0013165	pseudogene	Chr5:142294423-142294635 (+)
LP/J	MGP_LPJ_G0013234	pseudogene	Chr5:150359524-150359736 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013184	pseudogene	Chr5:163979643-163979855 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013638	pseudogene	Chr5:147692800-147693012 (+)
PWK/PhJ	MGP_PWKPhJ_G0012651	pseudogene	Chr5:142190725-142190940 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012439	pseudogene	Chr5:145425237-145425449 (+)
WSB/EiJ	MGP_WSBEiJ_G0012876	pseudogene	Chr5:148482571-148482783 (+)

Homology

• Gene Tree
  Gm15709
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083574 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083574	Ensembl Gene Model | MGI Sequence Detail	213	C57BL/6J
transcript	ENSMUST00000118354	Ensembl | MGI Sequence Detail	213	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15709:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49708	Chr5:144343335-144343361 (+)	-64 bp