Gm15773 Pseudogene Detail

Summary

• Symbol
  Gm15773
• Name
  predicted gene 15773

• Feature Type
  pseudogene
• IDs
  MGI:3783214
  NCBI Gene: 100417598
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:12336879-12338022 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 7.57 cM

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783214	pseudogene	Chr7:12336879-12338570 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013806	pseudogene	Chr7:9979592-9981038 (+)
A/J	MGP_AJ_G0013801	pseudogene	Chr7:9837300-9838746 (+)
AKR/J	MGP_AKRJ_G0013751	pseudogene	Chr7:10040350-10041800 (+)
BALB/cJ	MGP_BALBcJ_G0013783	pseudogene	Chr7:9940279-9941725 (+)
C3H/HeJ	MGP_C3HHeJ_G0013609	pseudogene	Chr7:10148649-10150095 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014176	pseudogene	Chr7:10536110-10537557 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012108	pseudogene	Chr7:11431939-11433383 (+)
CAST/EiJ	MGP_CASTEiJ_G0013291	pseudogene	Chr7:7714720-7716165 (+)
CBA/J	MGP_CBAJ_G0013586	pseudogene	Chr7:10693165-10694611 (+)
DBA/2J	MGP_DBA2J_G0013667	pseudogene	Chr7:9728030-9729476 (+)
FVB/NJ	MGP_FVBNJ_G0013666	pseudogene	Chr7:9705870-9707317 (+)
LP/J	MGP_LPJ_G0013749	pseudogene	Chr7:10040981-10042427 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013680	pseudogene	Chr7:10816547-10817994 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014157	pseudogene	Chr7:9857931-9859378 (+)
PWK/PhJ	MGP_PWKPhJ_G0013103	pseudogene	Chr7:8180370-8181817 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012882	pseudogene	Chr7:5936892-5938335 (+)
WSB/EiJ	MGP_WSBEiJ_G0013351	pseudogene	Chr7:9845227-9846677 (+)

Homology

• Gene Tree
  Gm15773
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082872 (Evidence)
• NCBI Gene
  100417598

Representative Sequences			Length	Strain/Species
genomic	100417598	NCBI Gene Model | MGI Sequence Detail	1144	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15773:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64477	Chr7:12337500-12337527 (+)	635 bp
Tssr64478	Chr7:12337652-12337657 (+)	776 bp