Gng5-ps Pseudogene Detail

Summary

• Symbol
  Gng5-ps
• Name
  G protein subunit gamma 5, pseudogene
• Synonyms
  Gm15776

• Feature Type
  pseudogene
• IDs
  MGI:3783217
  NCBI Gene: 100043507
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:22113777-22113981 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 13.22 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783217	pseudogene	Chr16:22113723-22114228 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  GNG5, G protein subunit gamma 5

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  GNG5, G protein subunit gamma 5
  
• Links
  HGNC:4408

  NCBI Gene ID: 2787

  neXtProt AC: NX_P63218

  UniProt: P63218

  
  
• Chr Location
  1p22.3; chr1:84498323-84506581 (-)  GRCh38

---

• MGI Vertebrate Homology
  Gng5-ps stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: GNG5
• Gene Tree
  Gng5-ps
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• Ensembl
  ENSMUSG00000082241 (Evidence)
• NCBI Gene
  100043507

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082241	Ensembl Gene Model | MGI Sequence Detail	205	C57BL/6J
transcript	ENSMUST00000120931	Ensembl | MGI Sequence Detail	205	Not Applicable

Other
Accession IDs

MGI:3782670, MGI:5898365

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gng5-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137544	Chr16:22113721-22113723 (+)	-55 bp