Gm15780 Pseudogene Detail

Summary

• Symbol
  Gm15780
• Name
  predicted gene 15780

• Feature Type
  pseudogene
• IDs
  MGI:3783222
  NCBI Gene: 100416845
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:148974205-148975135 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 78.76 cM

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783222	pseudogene	Chr6:148974202-148975136 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013778	pseudogene	Chr6:154186706-154187640 (+)
A/J	MGP_AJ_G0013773	pseudogene	Chr6:148074860-148075794 (+)
AKR/J	MGP_AKRJ_G0013727	pseudogene	Chr6:152493807-152494741 (+)
BALB/cJ	MGP_BALBcJ_G0013755	pseudogene	Chr6:147829633-147830567 (+)
C3H/HeJ	MGP_C3HHeJ_G0013583	pseudogene	Chr6:152545929-152546863 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014148	pseudogene	Chr6:158307786-158308720 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012092	pseudogene	Chr6:146788710-146789661 (+)
CAST/EiJ	MGP_CASTEiJ_G0013267	pseudogene	Chr6:152221138-152222082 (+)
CBA/J	MGP_CBAJ_G0013559	pseudogene	Chr6:164378497-164379431 (+)
DBA/2J	MGP_DBA2J_G0013639	pseudogene	Chr6:146872552-146873486 (+)
FVB/NJ	MGP_FVBNJ_G0013638	pseudogene	Chr6:145553781-145554715 (+)
LP/J	MGP_LPJ_G0013723	pseudogene	Chr6:154330571-154331505 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013653	pseudogene	Chr6:168007506-168008440 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014130	pseudogene	Chr6:152356471-152357405 (+)
PWK/PhJ	MGP_PWKPhJ_G0013079	pseudogene	Chr6:145391879-145392823 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012855	pseudogene	Chr6:150431875-150432825 (+)
WSB/EiJ	MGP_WSBEiJ_G0013326	pseudogene	Chr6:152956611-152957545 (+)

Homology

• Gene Tree
  Gm15780
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082829 (Evidence)
• NCBI Gene
  100416845

Representative Sequences			Length	Strain/Species
genomic	100416845	NCBI Gene Model | MGI Sequence Detail	931	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;