Gm16027 Pseudogene Detail

Summary

• Symbol
  Gm16027
• Name
  predicted gene 16027

• Feature Type
  pseudogene
• IDs
  MGI:3801732
  NCBI Gene: 100417906
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr19:40604330-40605087 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 34.25 cM

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801732	pseudogene	Chr19:40604330-40605202 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011494	pseudogene	Chr19:39831936-39832693 (+)
A/J	MGP_AJ_G0011489	pseudogene	Chr19:37891559-37892316 (+)
AKR/J	MGP_AKRJ_G0011454	pseudogene	Chr19:39183094-39183851 (+)
BALB/cJ	MGP_BALBcJ_G0011469	pseudogene	Chr19:37982457-37983214 (+)
C3H/HeJ	MGP_C3HHeJ_G0011357	pseudogene	Chr19:39325853-39326610 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011759	pseudogene	Chr19:40914434-40915191 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010302	pseudogene	Chr19:37301162-37301914 (+)
CAST/EiJ	MGP_CASTEiJ_G0011154	pseudogene	Chr19:38956670-38957425 (+)
CBA/J	MGP_CBAJ_G0011326	pseudogene	Chr19:42907067-42907824 (+)
DBA/2J	MGP_DBA2J_G0011383	pseudogene	Chr19:37796314-37797071 (+)
FVB/NJ	MGP_FVBNJ_G0011388	pseudogene	Chr19:37547802-37548559 (+)
LP/J	MGP_LPJ_G0011451	pseudogene	Chr19:39871488-39872245 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011384	pseudogene	Chr19:42601268-42602025 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011747	pseudogene	Chr19:39213574-39214331 (+)
PWK/PhJ	MGP_PWKPhJ_G0011011	pseudogene	Chr19:37640823-37641578 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010837	pseudogene	Chr19:37940947-37941704 (+)
WSB/EiJ	MGP_WSBEiJ_G0011182	pseudogene	Chr19:39376524-39377281 (+)

Homology

• Gene Tree
  Gm16027
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000090041 (Evidence)
• NCBI Gene
  100417906

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090041	Ensembl Gene Model | MGI Sequence Detail	758	C57BL/6J
transcript	ENSMUST00000161618	Ensembl | MGI Sequence Detail	758	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;